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AT4G39140.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G21500.1); Has 1557 Blast hits to 280 proteins in 56 species: Archae - 0; Bacteria - 6; Metazoa - 62; Fungi - 44; Plants - 176; Viruses - 0; Other Eukaryotes - 1269 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IEXZeggNOG:ENOG410YCNBEMBL:AL050351EMBL:AL161594
EMBL:AY062602EMBL:AY128790EMBL:CP002687EMBL:DQ059127
EnsemblPlants:AT4G39140EnsemblPlants:AT4G39140.1EnsemblPlants:AT4G39140.2EnsemblPlants:AT4G39140.3
EnsemblPlants:AT4G39140.4EnsemblPlants:AT4G39140.5entrez:830069Gene3D:3.30.40.10
GeneID:830069GO:GO:0008270Gramene:AT4G39140.1Gramene:AT4G39140.2
Gramene:AT4G39140.3Gramene:AT4G39140.4Gramene:AT4G39140.5hmmpanther:PTHR31150
hmmpanther:PTHR31150:SF2HOGENOM:HOG000237740InterPro:IPR001841InterPro:IPR013083
KEGG:ath:AT4G39140OMA:DLQTCGVPfscan:PS50089PhylomeDB:Q9T023
PIR:T08562PROSITE:PS50089Proteomes:UP000006548RefSeq:NP_001078514.1
RefSeq:NP_195625.1RefSeq:NP_849522.1RefSeq:NP_974711.1RefSeq:NP_974712.1
STRING:3702.AT4G39140.1SUPFAM:SSF57850TAIR:AT4G39140UniGene:At.27287
UniProt:Q9T023
Coordinates (TAIR10) chr4:-:18229637..18231282
Molecular Weight (calculated) 47550.30 Da
IEP (calculated) 9.08
GRAVY (calculated) -0.73
Length 429 amino acids
Sequence (TAIR10)
(BLAST)
001: MGNACCVAAR DKMVVPNSSA GENLQRSNIR HSPSWSFRWD NRGRVAGEET SLSWLSDGIS RNDGSEIKFE SAFVSSEGSP LDSFRTQTLQ KSPASDLSFP
101: RNSSMNTVFE QKENVSTESA APSYLSPAQL SLSLASQPSS FPTSPLSSQS YLHPASSSTL KLTQHPRLSK QVSDGQIYGQ NSLSRSSATE ERQGTPTRYD
201: SSQSGPSEGW SLQAFSEMMS SSRSNKALSY DNYDNDCFGL QRDKIDHHGN RMSKHQQHTC GACSRPLSEK SLWSSQKIFM TNELSVSAIL ACGHVYHGEC
301: LEQMTPEIDK FDPSCPICTM GEKKTAKLSE KALKVEMDLK ARHNKRLRNR VLDSDFDCDD FVMFDHSHRT AAAASKSPRL VSSSSAKSYS AKPFLARHFS
401: FGSRSNYKSP KENLPVKKKG FFWTKSSKI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)