AT1G02260.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.808 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Divalent ion symporter | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Divalent ion symporter; FUNCTIONS IN: citrate transmembrane transporter activity, transporter activity; INVOLVED IN: citrate transport, transmembrane transport; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Divalent ion symporter (InterPro:IPR004680); Has 9789 Blast hits to 6672 proteins in 1812 species: Archae - 302; Bacteria - 8135; Metazoa - 259; Fungi - 87; Plants - 203; Viruses - 2; Other Eukaryotes - 801 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:440757..442459 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 54727.20 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 7.46 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.46 | ||||||||||||||||||||||||||||
| Length | 502 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAMAPVIKLV LGSVAFAIFW ILAVFPSVPF LPIGRTAGSL FGAMLMVIFQ VITPEQAYAA IDLPILGLLF GTMVVSIYLE RADMFKYLGT LLSWKSRGPK 101: DLLCRVCLVS AVSSALFTND TSCVVLTEFV LKIARQKNLP PHPFLLALAT SANIGSSATP IGNPQNLVIA VQSKIPFWEF LLGVFPAMIV GITVNAMLLL 201: GMYWRLLSDH KEDEEEVQNA DSEVVAQEDV QSHRFSPATF SPVSSEDSNL RMDAAETLRN RAGSAGESEL ISCNSNASRE QHNDAESQGE SNNTNNMFQT 301: KRWRRVLWKS SVYFITLGML ISLLMGLNMS WTAITAALAL VVLDFKDARP SLEKVSYSLL IFFCGMFITV DGFNKTGIPT ALWDLMEPYA KIDQAKGIAV 401: LAVVILVLSN VASNVPTVLL LGARVAASAM GREEEKKAWL LLAWVSTVAG NLTLLGSAAN LIVCEQARRA VSHGYTLTFT KHFKFGLPST LIVTAIGLFL 501: IK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)