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AT5G59800.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : methyl-CPG-binding domain 7
Curator
Summary (TAIR10)
Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins. Interacts with arginine methyltransferase 11. (AtPRMT11
Computational
Description (TAIR10)
methyl-CPG-binding domain 7 (MBD7); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Methyl-CpG DNA binding (InterPro:IPR001739); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:21345eggNOG:ENOG4111HPQeggNOG:KOG4161EMBL:AB015475
EMBL:BT014975EMBL:BT015848EMBL:BX829918EMBL:CP002688
EnsemblPlants:AT5G59800EnsemblPlants:AT5G59800.1entrez:836101Gene3D:3.30.890.10
GeneID:836101Genevisible:Q9FJF4GO:GO:0000122GO:GO:0005634
GO:GO:0006346GO:GO:0006351GO:GO:0008327GO:GO:0010369
GO:GO:0019899GO:GO:0080167GO:GO:1901537hmmpanther:PTHR12396
hmmpanther:PTHR12396:SF9HOGENOM:HOG000152501InParanoid:Q9FJF4InterPro:IPR001739
InterPro:IPR016177KEGG:ath:AT5G59800OMA:KNSHYIDPaxDb:Q9FJF4
Pfam:PF01429Pfam:Q9FJF4Pfscan:PS50982PhylomeDB:Q9FJF4
PRIDE:Q9FJF4PRO:PR:Q9FJF4PROSITE:PS50982ProteinModelPortal:Q9FJF4
Proteomes:UP000006548RefSeq:NP_200788.1SMR:Q9FJF4STRING:3702.AT5G59800.1
SUPFAM:SSF54171TAIR:AT5G59800tair10-symbols:ATMBD7tair10-symbols:MBD7
UniGene:At.29205UniProt:Q9FJF4
Coordinates (TAIR10) chr5:-:24094752..24096422
Molecular Weight (calculated) 35036.40 Da
IEP (calculated) 10.75
GRAVY (calculated) -0.75
Length 306 amino acids
Sequence (TAIR10)
(BLAST)
001: MQTRSSSSPS ANHRRETQLQ IADPTSFCGK IMPGWTVVNR PRSSNNGVVD TYFIEPGTGR QFSSLEAIHR HLAGEVNDRR LTRAGSFFQD KTRVYEGSRT
101: KQDHCGVEYA SKGFRLPRGW SVEEVPRKNS HYIDKYYVER KTGKRFRSLV SVERYLRESR NSIEQQLRVL QNRRGHSKDF RLPDGWIVEE KPRRSSSHID
201: RSYIEPGTGN KFRSMAAVER YLISVGNITL DSVSMVHSER LPLLMNRNGI RFQSEVIDPN PPKKVKWVLT GSGGNMFTAN VRGSNVSSLV KHTWSEAFVS
301: LIEDRS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)