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AT5G59480.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.573
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: hydrolase activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pyrimidine 5-nucleotidase (InterPro:IPR010237), HAD-superfamily hydrolase, subfamily IA, variant 3 (InterPro:IPR006402); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT5G02230.2); Has 2253 Blast hits to 2250 proteins in 467 species: Archae - 3; Bacteria - 705; Metazoa - 0; Fungi - 141; Plants - 199; Viruses - 0; Other Eukaryotes - 1205 (source: NCBI BLink).
Protein Annotations
DNASU:836067eggNOG:COG1011eggNOG:KOG3109EMBL:AB025604
EMBL:AY070418EMBL:AY096745EMBL:CP002688EnsemblPlants:AT5G59480
EnsemblPlants:AT5G59480.1entrez:836067ExpressionAtlas:Q9LTI2Gene3D:3.40.50.1000
GeneID:836067GO:GO:0016787Gramene:AT5G59480.1hmmpanther:PTHR12725
hmmpanther:PTHR12725:SF72InterPro:IPR006439InterPro:IPR010237InterPro:IPR023214
OMA:FKMANINPfam:PF13419PhylomeDB:Q9LTI2Proteomes:UP000006548
RefSeq:NP_851223.1SMR:Q9LTI2STRING:3702.AT5G59480.1SUPFAM:SSF56784
TAIR:AT5G59480TIGRfam:TIGR01509TIGRfam:TIGR01993TIGRFAMs:TIGR01509
TIGRFAMs:TIGR01993UniGene:At.28360UniGene:At.29224UniProt:Q9LTI2
Coordinates (TAIR10) chr5:-:23979619..23981156
Molecular Weight (calculated) 32105.60 Da
IEP (calculated) 5.88
GRAVY (calculated) -0.25
Length 282 amino acids
Sequence (TAIR10)
(BLAST)
001: MAYEEHFQQT SEAKYDCLLF DIDDTLYPLS SGLAMEVKKN IQEYMVQKLG IEEDKVQELC LSLYKIYGTT MAGLKAVGYD FDYDDFHRFV HGRLPYSTLK
101: PDPILRNIIL SLPIRKVVFT NADKAHAAKI IARLGLEGCF EKIISFETLN PITKTESPVD TKTREIFDII SYMANPDSSI ELPKTSVVCK PSEGAFEQVF
201: KMANINPKKT LFFDDSIRNI QTGKRVGLHT VWVGTSHREE GVDIALEHIH NIREALPQLW DAVDDKAKEI RTRQKVAIET IA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)