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AT5G59370.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31023727 (2019): mitochondrion
  • PMID:30447334 (2019): plasma membrane
  • PMID:27943495 (2017): mitochondrion
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:14671022 (2004): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : actin 4
Curator
Summary (TAIR10)
Encodes one of eight Arabidopsis actins. ACT4 belongs to the reproductive actin subclass which is predominantly expressed in developing and reproductive tissues, such as pollen, pollen tubes, ovules, and developing seeds. Expression of the ACT4/GUS fusion was restricted to young vascular tissues, tapetum, and developing and mature pollen.
Computational
Description (TAIR10)
actin 4 (ACT4); FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: actin cytoskeleton organization; LOCATED IN: mitochondrion; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Actin, conserved site (InterPro:IPR004001), Actin/actin-like (InterPro:IPR004000), Actin/actin-like conserved site (InterPro:IPR020902); BEST Arabidopsis thaliana protein match is: actin-12 (TAIR:AT3G46520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5277eggNOG:KOG0676EMBL:AB025604EMBL:AY088111
EMBL:CP002688EMBL:U27980EnsemblPlants:AT5G59370EnsemblPlants:AT5G59370.1
EnsemblPlants:AT5G59370.2entrez:836056GeneID:836056Genevisible:P53494
GO:GO:0005200GO:GO:0005524GO:GO:0005739GO:GO:0005856
Gramene:AT5G59370.1Gramene:AT5G59370.2hmmpanther:PTHR11937hmmpanther:PTHR11937:SF255
HOGENOM:HOG000233339InParanoid:P53494InterPro:IPR004000InterPro:IPR004001
InterPro:IPR020902KEGG:ath:AT5G59370KO:K10355OMA:MAENEDI
PANTHER:PTHR11937PaxDb:P53494Pfam:P53494Pfam:PF00022
PhylomeDB:P53494PIR:S68108PRIDE:P53494PRINTS:PR00190
PRO:PR:P53494PROSITE:PS00406PROSITE:PS00432PROSITE:PS01132
ProteinModelPortal:P53494Proteomes:UP000006548RefSeq:NP_001078769.1RefSeq:NP_200745.1
scanprosite:PS00406scanprosite:PS00432scanprosite:PS01132SMART:SM00268
SMR:P53494STRING:3702.AT5G59370.1SUPFAM:SSF53067TAIR:AT5G59370
tair10-symbols:ACT4UniGene:At.29229UniProt:P53494
Coordinates (TAIR10) chr5:+:23950109..23951586
Molecular Weight (calculated) 41781.20 Da
IEP (calculated) 5.29
GRAVY (calculated) -0.21
Length 377 amino acids
Sequence (TAIR10)
(BLAST)
001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVNN WDDMEKIWHH TFYNELRVAP
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN TPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDH LMKILTERGY
201: SFTTTAEREI VRDMKEKLSY IALDFEQELE TSKTSSSVEK SFELPDGQVI TIGAERFRCP EVLFQPSMIG MENPGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFGG IGDRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)