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AT3G19310.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : PLC-like phosphodiesterases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
PLC-like phosphodiesterases superfamily protein; FUNCTIONS IN: phospholipase C activity, phosphoric diester hydrolase activity; INVOLVED IN: intracellular signaling pathway, lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase C, phosphatidylinositol-specific , X domain (InterPro:IPR000909), PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946); BEST Arabidopsis thaliana protein match is: PLC-like phosphodiesterases superfamily protein (TAIR:AT1G49740.1); Has 454 Blast hits to 451 proteins in 104 species: Archae - 0; Bacteria - 82; Metazoa - 4; Fungi - 158; Plants - 154; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IR3EeggNOG:ENOG4111H2IEMBL:AB025624EMBL:CP002686
EnsemblPlants:AT3G19310EnsemblPlants:AT3G19310.1entrez:821465Gene3D:3.20.20.190
GeneID:821465GO:GO:0006629GO:GO:0008081GO:GO:0016301
Gramene:AT3G19310.1hmmpanther:PTHR13593hmmpanther:PTHR13593:SF52HOGENOM:HOG000242533
InterPro:IPR000909InterPro:IPR017946KEGG:ath:AT3G19310OMA:CEDIAAC
Pfscan:PS50007PhylomeDB:Q9LT86PROSITE:PS50007Proteomes:UP000006548
RefSeq:NP_188562.1SUPFAM:SSF51695TAIR:AT3G19310TMHMM:TMhelix
UniGene:At.38419UniProt:Q9LT86
Coordinates (TAIR10) chr3:+:6694260..6696193
Molecular Weight (calculated) 45863.10 Da
IEP (calculated) 7.69
GRAVY (calculated) -0.18
Length 413 amino acids
Sequence (TAIR10)
(BLAST)
001: MFQRFTFFLT ALLIPCILII LSPSYALKEG ETCIVSKNCD RGLHCESCLA SDSFRPRCSR MQPINPTTKV KGLPYNKYSW LTTHNSFARM GAKSGTGSMI
101: LAPSNQQDSI TSQLLNGVRG FMLDLYDFQN DIWLCHSYGG NCFNYTAFQP AVNILKEFQV FLDKNKDVVV TLILEDYVKS PNGLTRVFDA SGLRNFMFPV
201: SRMPKNGEDW PTLDDMICQN QRLLVFTSNP QKEASEGIAF MWRYMIENQY GDGGMKAGVC TNRPESVAMG DRSRSLILVN YFPDTADVIG SCKQNSAPLL
301: DTVKNCQEAS GKRWPNFIAV DFYKRSDGGG APKAVDVANG HAVCGCEDIA ACKENMPYGT CEKQEEKKPE SNLMMIAKLT AEATKGYGHP STKPTLLGLS
401: VFVVTFVSLL STF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)