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AT1G23350.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant invertase/pectin methylesterase inhibitor superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plant invertase/pectin methylesterase inhibitor superfamily protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily protein (TAIR:AT1G70540.1); Has 124 Blast hits to 124 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
DNASU:838944eggNOG:ENOG410JSYSeggNOG:ENOG41108CKEMBL:AC005292
EMBL:AK175880EMBL:BT010492EMBL:CP002684EnsemblPlants:AT1G23350
EnsemblPlants:AT1G23350.1entrez:838944Gene3D:1.20.140.40GeneID:838944
GO:GO:0004857Gramene:AT1G23350.1hmmpanther:PTHR31707HOGENOM:HOG000152242
InterPro:IPR006501KEGG:00040+3.1.1.11KEGG:00500+3.1.1.11KEGG:ath:AT1G23350
ncoils:CoilOMA:KENDGFSPfam:PF04043PhylomeDB:Q9LR23
Proteomes:UP000006548RefSeq:NP_173749.1SMART:SM00856SMR:Q9LR23
SUPFAM:SSF101148TAIR:AT1G23350TIGRfam:TIGR01614TIGRFAMs:TIGR01614
UniGene:At.41554unipathway:UPA00545UniProt:Q9LR23
Coordinates (TAIR10) chr1:-:8293696..8294175
Molecular Weight (calculated) 17264.70 Da
IEP (calculated) 7.82
GRAVY (calculated) -0.05
Length 159 amino acids
Sequence (TAIR10)
(BLAST)
001: MSINPYVTIF LLLAATSSQA LSISLADPCT VSDFPALCRS TIKGQTNVNA ATDVAIKELM KRTRQAKKIA EKELKRDGGV ATCLSNFNSA FDNLEKALTN
101: IKENDGFSLN INLSAALTDY DTCSDSMKET KEVNVIYKSA GVLYRMADNC LALSTLVKH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)