AT5G50830.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.982 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; Has 4984 Blast hits to 3288 proteins in 342 species: Archae - 12; Bacteria - 257; Metazoa - 1366; Fungi - 452; Plants - 199; Viruses - 77; Other Eukaryotes - 2621 (source: NCBI BLink). | ||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:20683452..20684549 | ||||||||||||||||||||
| Molecular Weight (calculated) | 31220.20 Da | ||||||||||||||||||||
| IEP (calculated) | 4.86 | ||||||||||||||||||||
| GRAVY (calculated) | -1.07 | ||||||||||||||||||||
| Length | 281 amino acids | ||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGCGGSRLGG VATTRAEEGG VVPLPAGIRP LLRRRLEEMK KRSHAGVLKG SQTLSKKELL RHNSSEDGED TEENDGSLKA SAKVAPAPDH NVEEKKEVIY 101: EKIPSKDDVK EVKEEVVVNK QEEDNHHQDV VEKQEEENKE VVKKQEEENH DDDVVVINVK KEGDDGKNHD VDEGSINNFD ERMIGPGSPS FRVYCVDVPS 201: DDDDEEKDVE DARKSMETES VTTEIKEDGS IVKKEKKERR GKRFGIALPR KYLANVTAPC YAGGGCMGNT HSRLVQEKSS Q |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)