AT3G28830.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF1216) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF1216); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1216 (InterPro:IPR009605); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1216) (TAIR:AT3G28790.1); Has 93015 Blast hits to 41050 proteins in 2634 species: Archae - 255; Bacteria - 23236; Metazoa - 27697; Fungi - 12880; Plants - 3469; Viruses - 1042; Other Eukaryotes - 24436 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:10831233..10833020 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 55503.90 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 10.42 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.45 | ||||||||||||||||||||||||||||
| Length | 539 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MARISLGICL MLVVASSVIY EAQGTFLLNH YLKKNFPKKC NEFTPYANKG MITLVTDLEG SSPATTEFKT FFTQFKSYMS FIETTSASTK NVDAEMTAKC 101: DGLFKAMSAL SASKGVKSAD AGSMKMTMLS MGKTLVEQKK NTKIMTLKEK KELVIDMVKW TKMVATFVKS ASEQKGKSIN IASYGLDVDV NDSSIVGGAA 201: SSESSSTKSG SVSSSGSVST KSKESSSSGS SASGSVATKS KESSGGSAAT KSKESSGGSA ATKSKESSGG SATTGKTSGS PSGSPKASPS GSVSGKSSSK 301: GSASAQGSAS AQGSASAQGS ASAQGSASAQ RRESGAMAMS KSRETKTSSQ RQSKSSSESS SSSTTTTTVK QVESETSKEV MSFIMQLEKK YAAKAELKVF 401: FESLKSSMQA SASVGSKTAK DYVSASKAAT GKLSEAMASV SSKNVKSAKM KSNLDTSKDE MLKCVKQIQD INGKMVSGKT VSSTQQSELK QTITKWEKVT 501: TQFVETAASS SSSSSSSSSS SSSSAASQQQ GNAAMVKTN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)