AT5G57800.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Fatty acid hydroxylase superfamily | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
encodes a transmembrane protein with similarity to the sterol desaturase family at the N-terminus and to the short-chain dehydrogenase/reductase family at the C-terminus. Mutant analyses indicate this protein is involved in cuticle membrane and wax biosynthesis. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ECERIFERUM 3 (CER3); FUNCTIONS IN: oxidoreductase activity, binding, iron ion binding, catalytic activity; INVOLVED IN: cuticle hydrocarbon biosynthetic process, response to salt stress, pollen sperm cell differentiation, wax biosynthetic process, cuticle development; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Fatty acid hydroxylase (InterPro:IPR006694), Uncharacterised protein, Wax2 C-terminal (InterPro:IPR021940); BEST Arabidopsis thaliana protein match is: Fatty acid hydroxylase superfamily (TAIR:AT1G02205.2); Has 879 Blast hits to 877 proteins in 232 species: Archae - 0; Bacteria - 279; Metazoa - 24; Fungi - 149; Plants - 340; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:23420589..23423832 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 72292.90 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.59 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.24 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 632 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVAFLSAWPW ENFGNLKYLL YAPLAAQVVY SWVYEEDISK VLWCIHILII CGLKALVHEL WSVFNNMLFV TRTLRINPKG IDFKQIDHEW HWDNYIILQA 101: IIVSLICYMS PPLMMMINSL PLWNTKGLIA LIVLHVTFSE PLYYFLHRSF HRNNYFFTHY HSFHHSSPVP HPMTAGNATL LENIILCVVA GVPLIGCCLF 201: GVGSLSAIYG YAVMFDFMRC LGHCNVEIFS HKLFEILPVL RYLIYTPTYH SLHHQEMGTN FCLFMPLFDV LGDTQNPNSW ELQKKIRLSA GERKRVPEFV 301: FLAHGVDVMS AMHAPFVFRS FASMPYTTRI FLLPMWPFTF CVMLGMWAWS KTFLFSFYTL RNNLCQTWGV PRFGFQYFLP FATKGINDQI EAAILRADKI 401: GVKVISLAAL NKNEALNGGG TLFVNKHPDL RVRVVHGNTL TAAVILYEIP KDVNEVFLTG ATSKLGRAIA LYLCRRGVRV LMLTLSMERF QKIQKEAPVE 501: FQNNLVQVTK YNAAQHCKTW IVGKWLTPRE QSWAPAGTHF HQFVVPPILK FRRNCTYGDL AAMKLPKDVE GLGTCEYTME RGVVHACHAG GVVHMLEGWK 601: HHEVGAIDVD RIDLVWEAAM KYGLSAVSSL TN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)