suba logo
AT5G54500.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
vacuole 0.676
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31541795 (2020): plasma membrane
  • PMID:31520498 (2020): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25641898 (2015): plasma membrane
  • PMID:24124904 (2013): plastid
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22923678 (2012): plasma membrane
  • PMID:22550958 (2012): plastid
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:20843791 (2010): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:19329564 (2009): peroxisome
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:16635983 (2006): plasma membrane
  • PMID:15060130 (2004): plasma membrane
  • PMID:14760709 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : flavodoxin-like quinone reductase 1
Curator
Summary (TAIR10)
Encodes a flavin mononucleotide-binding flavodoxin-like quinone reductase that is a primary auxin-response gene.
Computational
Description (TAIR10)
flavodoxin-like quinone reductase 1 (FQR1); FUNCTIONS IN: FMN binding, oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor; INVOLVED IN: oxidation reduction, response to auxin stimulus; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Flavoprotein WrbA (InterPro:IPR010089), NADPH-dependent FMN reductase (InterPro:IPR005025), Flavodoxin/nitric oxide synthase (InterPro:IPR008254); BEST Arabidopsis thaliana protein match is: Quinone reductase family protein (TAIR:AT4G27270.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G54500-MONOMERBioCyc:ARA:GQT-1850-MONOMEREC:1.6.5.2EMBL:AB026634
EMBL:AY120735EMBL:BT002194EMBL:CP002688EnsemblPlants:AT5G54500
EnsemblPlants:AT5G54500.1entrez:835538ExpressionAtlas:Q9LSQ5Gene3D:3.40.50.360
GeneID:835538Genevisible:Q9LSQ5GO:GO:0003955GO:GO:0010181
GO:GO:0045892GO:GO:0055114GO:GO:0071365HAMAP:MF_01017
hmmpanther:PTHR30546HOGENOM:HOG000030539InParanoid:Q9LSQ5InterPro:IPR005025
InterPro:IPR008254InterPro:IPR010089InterPro:IPR029039KEGG:00130+1.6.5.2
Pfam:PF03358Pfam:Q9LSQ5Pfscan:PS50902PhylomeDB:Q9LSQ5
PRIDE:Q9LSQ5PRO:PR:Q9LSQ5ProMEX:Q9LSQ5PROSITE:PS50902
ProteinModelPortal:Q9LSQ5Proteomes:UP000006548RefSeq:NP_200261.1SMR:Q9LSQ5
SUPFAM:SSF52218TAIR:AT5G54500tair10-symbols:FQR1TIGRfam:TIGR01755
TIGRFAMs:TIGR01755UniGene:At.43051UniProt:Q9LSQ5
Coordinates (TAIR10) chr5:+:22124674..22126256
Molecular Weight (calculated) 21797.10 Da
IEP (calculated) 6.36
GRAVY (calculated) -0.11
Length 204 amino acids
Sequence (TAIR10)
(BLAST)
001: MATKVYIVYY SMYGHVEKLA EEIRKGAASV EGVEAKLWQV PETLHEEALS KMSAPPKSES PIITPNELAE ADGFVFGFPT RFGMMAAQFK AFLDATGGLW
101: RAQALAGKPA GIFYSTGSQG GGQETTALTA ITQLVHHGML FVPIGYTFGA GMFEMENVKG GSPYGAGTFA GDGSRQPTEL ELQQAFHQGQ YIASITKKLK
201: GSTA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)