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AT5G54095.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.987
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27580.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JX11eggNOG:ENOG41104EAEMBL:AK175627EMBL:BT030657
EMBL:CP002688EnsemblPlants:AT5G54095EnsemblPlants:AT5G54095.1entrez:835496
GeneID:835496Gramene:AT5G54095.1HOGENOM:HOG000140923KEGG:ath:AT5G54095
OMA:ANDTKTNProteomes:UP000006548RefSeq:NP_568803.1STRING:3702.AT5G54095.1
TAIR:AT5G54095UniGene:At.66771UniProt:Q681J0
Coordinates (TAIR10) chr5:-:21952868..21953369
Molecular Weight (calculated) 14232.30 Da
IEP (calculated) 4.02
GRAVY (calculated) -0.76
Length 135 amino acids
Sequence (TAIR10)
(BLAST)
001: MGGCASKPKE SDIPETEKTV VESKNVETET VSQEKADEVV TEKKEESAGD VAETPKEAEA AKPAEAEAAK PAEAEVAKPA EAEVAKPAEA EAAPEVVKTE
101: EAVVETVKET EPPKQEEAVV AANYTKTNEE PLVTL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)