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AT3G28750.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1216 (InterPro:IPR009605); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G39880.1); Has 37 Blast hits to 31 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JT7JeggNOG:ENOG4110844EMBL:AK118182EMBL:AP002057
EMBL:CP002686EMBL:DQ446712EnsemblPlants:AT3G28750EnsemblPlants:AT3G28750.1
entrez:822507GeneID:822507Gramene:AT3G28750.1hmmpanther:PTHR31607
KEGG:ath:AT3G28750OMA:YTVMAERPhylomeDB:Q9LHA0Proteomes:UP000006548
RefSeq:NP_189517.1STRING:3702.AT3G28750.1TAIR:AT3G28750UniGene:At.5944
UniProt:Q9LHA0
Coordinates (TAIR10) chr3:-:10791772..10792773
Molecular Weight (calculated) 35480.60 Da
IEP (calculated) 10.45
GRAVY (calculated) 0.09
Length 333 amino acids
Sequence (TAIR10)
(BLAST)
001: MARISLLFSL ALVLAIGSVL AHPPTHKKLQ KTLCPSTLSK VQAFPYLEVS SFVEKKVQFA PKTIAFKSLF SICKSYIDFL GGVKFSASRD VFHVVHVKFT
101: LMTKAMVIAQ AHIGVEGDLA VKLGKSYTVM AERFVNLLEM MSTVSAKYKF DANAKISASE SAEIEKCVMK LKSAIRSYVK VISQCSTKFS AGKSIGFPTY
201: PVGFIGGIAK QGLGYAGKFV GAHGQVGAGF EIGAKAKVGV QSEKFLEYGP ITKPKGKVGV QGEVKVGGQV HAAGKAKVRA QVEAKVGGET GSGYYDGIMK
301: YFGKGHFDAA GKAHVSGGSG FRPLSNPHKK HLD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)