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AT5G53750.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.508
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : CBS domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CBS domain-containing protein; CONTAINS InterPro DOMAIN/s: Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: Cystathionine beta-synthase (CBS) family protein (TAIR:AT4G27460.1); Has 152 Blast hits to 152 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 150; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKMPeggNOG:ENOG4111QFCEMBL:CP002688EnsemblPlants:AT5G53750
EnsemblPlants:AT5G53750.1entrez:835456GeneID:835456GO:GO:0009611
Gramene:AT5G53750.1hmmpanther:PTHR13780hmmpanther:PTHR13780:SF39InParanoid:F4JXB6
InterPro:IPR000644KEGG:ath:AT5G53750OMA:CIGLFAPPaxDb:F4JXB6
Pfam:PF00571Pfscan:PS51371PRIDE:F4JXB6PROSITE:PS51371
ProteinModelPortal:F4JXB6Proteomes:UP000006548RefSeq:NP_200186.2SMR:F4JXB6
SUPFAM:SSF54631TAIR:AT5G53750UniGene:At.29535UniProt:F4JXB6
Coordinates (TAIR10) chr5:+:21817416..21818723
Molecular Weight (calculated) 43796.90 Da
IEP (calculated) 5.10
GRAVY (calculated) 0.27
Length 408 amino acids
Sequence (TAIR10)
(BLAST)
001: MALTLLSHEL SDLCIGKPPL RCLSVATATV ADAIAALKSS DEPFLTVWSC NHDEKTDDND KCECLGKICM ADVICYLSKF DNNVLSLSSA FDASVSVLLP
101: KSRALVVHVQ SSCSLIEAID LIIKGAQNLI VPIHTKSITK RRQQQKLLKR NVVVSLTNAT STTHKNSREF CWITQEDIIR FLLDSISVFS PLPSLSISDL
201: GVINSTHTIL AVDYYSSAAS AVSAISRAIL DNVSVAVVGK GCDQEDPCMV LIGEISPMTL ACCDETAVAA VATLSAGDLM SYIDGSGPPE SLVGVVRNRL
301: EDKGMVGLIS LIDSLSLSSG SSSDEESPAG KTRMTSSYGR SVSSAARMAR KSVAIVCNRK SSLMAVMIQA IAHRVSYVWV IDEDGCLIGM VTFVDILKLF
401: REFLDDEN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)