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AT1G61890.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:15215502 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : MATE efflux family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: response to karrikin; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G11670.1); Has 9516 Blast hits to 9487 proteins in 1915 species: Archae - 228; Bacteria - 6498; Metazoa - 145; Fungi - 328; Plants - 1371; Viruses - 0; Other Eukaryotes - 946 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0534eggNOG:KOG1347EMBL:AC004392EMBL:AF325100
EMBL:AK317647EMBL:AY048279EMBL:AY057622EMBL:CP002684
EnsemblPlants:AT1G61890EnsemblPlants:AT1G61890.1entrez:842485GeneID:842485
Genevisible:O80695GO:GO:0015238GO:GO:0015297GO:GO:0016021
GO:GO:0080167Gramene:AT1G61890.1hmmpanther:PTHR11206hmmpanther:PTHR11206:SF140
HOGENOM:HOG000177025InParanoid:O80695InterPro:IPR002528KEGG:ath:AT1G61890
KO:K03327ncoils:CoilOMA:CRRTWEGPaxDb:O80695
Pfam:PF01554PIR:T02134PRIDE:O80695ProteinModelPortal:O80695
Proteomes:UP000006548RefSeq:NP_564787.1SMR:O80695STRING:3702.AT1G61890.1
TAIR:AT1G61890TIGRfam:TIGR00797TIGRFAMs:TIGR00797TMHMM:TMhelix
UniGene:At.10738UniGene:At.67935UniProt:O80695
Coordinates (TAIR10) chr1:-:22868103..22871163
Molecular Weight (calculated) 55136.90 Da
IEP (calculated) 6.51
GRAVY (calculated) 0.69
Length 501 amino acids
Sequence (TAIR10)
(BLAST)
001: MNSESLENLH RPLIESSKSF VDYRLETVLT DRELPYFRRI YLAMMIEMKF LFHLAAPAIF VYVINNGMSI LTRIFAGHVG SFELAAASLG NSGFNMFTYG
101: LLLGMGSAVE TLCGQAHGAH RYEMLGVYLQ RSTVVLILTC LPMSFLFLFS NPILTALGEP EQVATLASVF VYGMIPVIFA YAVNFPIQKF LQSQSIVTPS
201: AYISAATLVI HLILSWIAVY RLGYGLLALS LIHSFSWWII VVAQIVYIKM SPRCRRTWEG FSWKAFEGLW DFFRLSAASA VMLCLESWYS QILVLLAGLL
301: KNPELALDSL AICMSISAIS FMVSVGFNAA ASVRVSNELG AGNPRAAAFS TVVTTGVSFL LSVFEAIVVL SWRHVISYAF TDSPAVAEAV ADLSPFLAIT
401: IVLNGIQPVL SGVAVGCGWQ AFVAYVNIGC YYVVGIPVGF VLGFTYDMGA KGIWTGMIGG TLMQTIILVI VTLRTDWDKE VEKASSRLDQ WEESREPLLK
501: Q
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)