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AT5G20190.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27137770 (2016): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G80130.1); Has 458 Blast hits to 304 proteins in 39 species: Archae - 0; Bacteria - 85; Metazoa - 7; Fungi - 10; Plants - 317; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IXXIeggNOG:ENOG41117EXEMBL:CP002688EnsemblPlants:AT5G20190
EnsemblPlants:AT5G20190.1entrez:832142Gene3D:1.25.40.10GeneID:832142
Gramene:AT5G20190.1hmmpanther:PTHR26312hmmpanther:PTHR26312:SF75InParanoid:F4K464
InterPro:IPR011990InterPro:IPR013026iPTMnet:F4K464KEGG:ath:AT5G20190
ncoils:CoilOMA:CYSPMSVPaxDb:F4K464Pfscan:PS50293
PhylomeDB:F4K464PRIDE:F4K464PROSITE:PS50293ProteinModelPortal:F4K464
Proteomes:UP000006548RefSeq:NP_197519.1STRING:3702.AT5G20190.1SUPFAM:SSF48452
TAIR:AT5G20190UniGene:At.31218UniProt:F4K464
Coordinates (TAIR10) chr5:+:6814093..6815171
Molecular Weight (calculated) 31820.80 Da
IEP (calculated) 4.83
GRAVY (calculated) -0.61
Length 290 amino acids
Sequence (TAIR10)
(BLAST)
001: MLLRSASTPL LNSLVHVSSP RDSPIETVES VHQIQRHRSI TLSASSSSCC YSPMSVHSSD DSSRRMKRTA SDSDLRHLTS TKPPVSKFLS GGALMEDVDE
101: GIGFGLIRTS SYDGISWALD EDTEVAGGGG GGMFHGGGKG RSGGRSDGGD GGDDNTDVHY RKMIEANPGN GIFLSNYAKF LKEVRKDYLK AEEYCGRAIL
201: VSPNDGNVLA MYAELVWKIH KDSSRAENYF NQAVAAAPED CYVQASYARF LWDAEEEEEE EKEERHEEEL EHQTSRMNFF TGPSPITAMS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)