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AT5G53420.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : CCT motif family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CCT motif family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: CCT motif family protein (TAIR:AT4G27900.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IE05eggNOG:ENOG410YARKEMBL:AY099753EMBL:BT000280
EMBL:CP002688EnsemblPlants:AT5G53420EnsemblPlants:AT5G53420.1entrez:835423
ExpressionAtlas:Q8L602GeneID:835423Gramene:AT5G53420.1hmmpanther:PTHR31717
hmmpanther:PTHR31717:SF2InterPro:IPR010402OMA:NLSSMDWPfam:PF06203
Pfscan:PS51017PhylomeDB:Q8L602PROSITE:PS51017Proteomes:UP000006548
RefSeq:NP_568793.1STRING:3702.AT5G53420.1TAIR:AT5G53420UniGene:At.8948
UniProt:Q8L602
Coordinates (TAIR10) chr5:+:21673683..21675469
Molecular Weight (calculated) 30038.50 Da
IEP (calculated) 4.57
GRAVY (calculated) -0.61
Length 264 amino acids
Sequence (TAIR10)
(BLAST)
001: MYQDSGLMLR YMQNCPPDIQ QFEDLFKSYK LSDEMNNTFV ESSNISEYDI GEESDLFRAP DPILEEPILT VDPLSAALTM ISCGEDTSQG LCELPDLGSL
101: QSGQQLLDKA FYECEQDLMM KSAMESPFSD VLDIKNISVV TTINENQDMQ KSVSSGNLSS MDWSHAQQET VMIQNFPDFD FGYGMRRAFS EGDIQKLGAG
201: LVQSPLDRII VSCTSEDRRE KLSRYKNKKS RRNFGRKIKY ACRKALADSQ PRVRGRFAKT EERK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)