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AT5G53360.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.512
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : TRAF-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
TRAF-like superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; INVOLVED IN: multicellular organismal development, protein ubiquitination, ubiquitin-dependent protein catabolic process; LOCATED IN: endomembrane system, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), Seven-in-absentia protein, TRAF-like domain (InterPro:IPR018121), Zinc finger, SIAH-type (InterPro:IPR013010), Seven In Absentia Homolog-type (InterPro:IPR013323), Seven-in-absentia protein, sina (InterPro:IPR004162), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: Protein with RING/U-box and TRAF-like domains (TAIR:AT4G27880.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
EnsemblPlants:AT5G53360EnsemblPlants:AT5G53360.1entrez:835417hmmpanther:PTHR10315
hmmpanther:PTHR10315:SF41KEGG:00220+6.3.2.-KEGG:00261+6.3.2.-KEGG:00380+6.3.2.-
Pfam:PF03145Pfscan:PS51081unipathway:UPA00143
Coordinates (TAIR10) chr5:+:21648485..21649269
Molecular Weight (calculated) 26710.90 Da
IEP (calculated) 7.14
GRAVY (calculated) -0.36
Length 233 amino acids
Sequence (TAIR10)
(BLAST)
001: MDILYVQPVN QECIIALEKV AESLELPCKY YNLGCLGIFP YYSKLKHESQ CNFRPYSCPY AGSECAAVGD ITFLVAHLRD DHKVDMHTGC TFNHRYVKSN
101: PREVENATWM LTVFQCFGQY FCLHFEAFQL GMAPVYMAFL RFMGDEDDAR NYTYSLEVGG SGRKQTWEGT PRSVRDSHRK VRDSHDGLII QRNMALFFSG
201: GDKKELKLRV TGRIWKEQQN PDSGVCITSM CSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)