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AT5G51950.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Glucose-methanol-choline (GMC) oxidoreductase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Glucose-methanol-choline (GMC) oxidoreductase family protein; FUNCTIONS IN: aldehyde-lyase activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding; INVOLVED IN: response to salt stress; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Glucose-methanol-choline oxidoreductase, N-terminal (InterPro:IPR000172), Glucose-methanol-choline oxidoreductase (InterPro:IPR012132), Glucose-methanol-choline oxidoreductase, C-terminal (InterPro:IPR007867); BEST Arabidopsis thaliana protein match is: Glucose-methanol-choline (GMC) oxidoreductase family protein (TAIR:AT3G56060.1); Has 10743 Blast hits to 10416 proteins in 1097 species: Archae - 4; Bacteria - 3990; Metazoa - 824; Fungi - 1486; Plants - 311; Viruses - 15; Other Eukaryotes - 4113 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G51950-MONOMERBioCyc:ARA:GQT-947-MONOMEReggNOG:COG2303eggNOG:KOG1238
EMBL:AF367287EMBL:BT006354EMBL:CP002688EnsemblPlants:AT5G51950
EnsemblPlants:AT5G51950.1entrez:835270ExpressionAtlas:Q94KD2Gene3D:3.50.50.60
GeneID:835270GO:GO:0016614GO:GO:0050660Gramene:AT5G51950.1
hmmpanther:PTHR11552hmmpanther:PTHR11552:SF141HOGENOM:HOG000239349InterPro:IPR000172
InterPro:IPR007867InterPro:IPR012132InterPro:IPR023753KEGG:00260+1.2.1.8+1.1.99.1
OMA:DIENFATPfam:PF00732Pfam:PF05199PhylomeDB:Q94KD2
PIRSF:PIRSF000137PROSITE:PS00624Proteomes:UP000006548RefSeq:NP_200008.1
scanprosite:PS00624SMR:Q94KD2STRING:3702.AT5G51950.1SUPFAM:SSF51905
SUPFAM:SSF54373TAIR:AT5G51950UniGene:At.19147UniGene:At.66742
unipathway:UPA00529UniProt:Q94KD2
Coordinates (TAIR10) chr5:-:21106093..21108559
Molecular Weight (calculated) 64807.70 Da
IEP (calculated) 7.24
GRAVY (calculated) -0.11
Length 586 amino acids
Sequence (TAIR10)
(BLAST)
001: MGLQILWLFR KIFIITYIFH ASCSPDKAGY YSFMKDATLA PMFARFDYII IGGGTSGCAL AATLSQNASV LVLERGGAPY DNPTATDIEN FATTLSNTSP
101: KSWSQLFISE DGVYNTRARV LGGGSVLNAG FYTRAGDEYV KETEWKTDEV EAAYEWVEKK VAFQPPVLGW QTAFKDGLLE AGEFPYNGFT YDHIYGTKIG
201: GTIFDRAGHR HTAADLLEYA NPGNIVVYLH ASVHKILFTT KGRPRPKAYG VIFQDANGVL HKAELEKNSM NEVILSAGAI GSPQLLMLSG IGPAAHLAAH
301: GIKPLVLDHP MVGQGMGDNP MNAIFIPSPT PVEVSLIQVV GITKFESYIE GASGVIFSYS WTRRFFDGVL NYLNEMQTSR TTSTTSPTLS TQSITDFFNP
401: INPLLNATTR AGLILQKIAG PISRGHLELR NTNPDDNPSV RFNYYQEPED LQICVEGINT IIKVINSKAF SKFKYPDATI HGLLDLMLSV PTNLRPRHIT
501: SMFNLRQFCI DTVMTIWHYH GGCQVGRVVD KNYRVLGIDS LRVIDGSTFL KSPGTNPQAT VMMLGRYMGQ RILQEREIYN KPDKEA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)