AT5G51730.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.979 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RNA-binding (RRM/RBD/RNP motifs) family protein; BEST Arabidopsis thaliana protein match is: nucleolin like 2 (TAIR:AT3G18610.1); Has 148 Blast hits to 118 proteins in 19 species: Archae - 0; Bacteria - 4; Metazoa - 1; Fungi - 0; Plants - 136; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:21011418..21013365 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 34974.70 Da | ||||||||||||||||||||||||
| IEP (calculated) | 8.93 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.49 | ||||||||||||||||||||||||
| Length | 317 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGQSSKSMLG SPSPDKRKAE DELETVNPKK KIICLIASIK EDVSSIKVVV DSLKEDVASL KATVNSLKST FDLLSTKKDS LAIFTSFKET ARIPASVKNI 101: VRPVIQNSAS SEDLKISDQG EEPAHKKAKT DTNTCKKESS RNVSSKESDV VKKETLERTL PTYSFKNLTK TAEVGERALF IPKQGGRYDC GTIFVKGYDS 201: SLGENDLARA LLEHFSPCGM ISRIYFQTND AGEAVLKHVF IVMLQGTEDA LKLNGSDMGG CNLEVHDATE RDEFYVNYEV SGGPFIKKPC QRLLARRKYT 301: RENPPVYGIV SSSKINK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)