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AT5G64830.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : programmed cell death 2 C-terminal domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
programmed cell death 2 C-terminal domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: apoptosis; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Programmed cell death protein 2, C-terminal (InterPro:IPR007320); BEST Arabidopsis thaliana protein match is: zinc finger (MYND type) family protein / programmed cell death 2 C-terminal domain-containing protein (TAIR:AT4G02220.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XRI4eggNOG:KOG2061EMBL:AB019236EMBL:AF412091
EMBL:BT026030EMBL:CP002688EnsemblPlants:AT5G64830EnsemblPlants:AT5G64830.1
entrez:836606ExpressionAtlas:Q9LV94GeneID:836606GO:GO:0005737
Gramene:AT5G64830.1hmmpanther:PTHR12298HOGENOM:HOG000083862InterPro:IPR007320
OMA:QYEMQLMPfam:PF04194PhylomeDB:Q9LV94Proteomes:UP000006548
RefSeq:NP_201288.1STRING:3702.AT5G64830.1TAIR:AT5G64830UniGene:At.7842
UniProt:Q9LV94
Coordinates (TAIR10) chr5:-:25914911..25916512
Molecular Weight (calculated) 42658.00 Da
IEP (calculated) 4.64
GRAVY (calculated) -0.59
Length 380 amino acids
Sequence (TAIR10)
(BLAST)
001: MVGILLGLPG KWAEDELEPS DHYTTKIGGL PDWPPIPDDA LKPELLNCCS CGSKLSLVAQ VYAPISTEIL DIQERTLYIF GCLMPKCGTS EQSWRAFSIQ
101: KAIAKEKGST KIADLPVAFP KTHRLDGDDD DDDDDDEDFD FASLAKALAE ASSAAASITK KQKSKPSGNA SSGTKAKPSP LKSETRVEDH IKLETGAVVP
201: CFYIYTKEEI PSKEVDRFSQ NYSSLSIKDK GTGNNDESES EEKWEDEKYE YDKALNADRT YLKFKKRLDA NPEQCFRYWY GGKPILATED MKSPDKCRNC
301: DSQRHFEIQL MPPLIYFLHE GVVDKGIKQS LDNWDWMTLI VYTCSKSCAN AVNGDWVVTE ECVAVQYEKP MNLDHASFFK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)