AT5G50740.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Heavy metal transport/detoxification superfamily protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Heavy metal transport/detoxification superfamily protein ; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: farnesylated protein 3 (TAIR:AT5G63530.1); Has 3627 Blast hits to 2265 proteins in 257 species: Archae - 2; Bacteria - 226; Metazoa - 530; Fungi - 59; Plants - 2104; Viruses - 3; Other Eukaryotes - 703 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:20635983..20637847 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 32082.60 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 8.05 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.07 | ||||||||||||||||||||||||||||
| Length | 283 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEEKKSEEPQ AKSEDKKPEE EKKKEPQEIV LKIFMHCEGC AKKIHRCLKG FEGVEDVTTD CKTSKVVVKG EKADPLKVLQ RLQRKSHRQV ELISPIPEPK 101: PVSDEPEKKE KEKPKPEEKK EEVVTVVLRV HMHCEACAME IQKRIMRMKG VESVEPDFKA SQVSVKGVFT PEKLVEFIYK RIGKHAAVVK QDPPPKPPEK 201: EKETKDKDEK KKEEGQPKEG KEAKENGGGG GAKGDGAAAE EGNKVVDLKK NEYQYQPPRY PVEMFAYPPQ IFSDENPNAC TII |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)