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AT5G49970.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31911558 (2020): mitochondrion
  • PMID:31871212 (2020): mitochondrion
  • PMID:31818904 (2020): mitochondrion
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:24124904 (2013): plastid
  • PMID:21311031 (2011): mitochondrion
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : pyridoxin (pyrodoxamine) 5'-phosphate oxidase
Curator
Summary (TAIR10)
encodes the bifunctional pyridoxine (pyridoxamine) 5?-phosphate oxidase (PPOX)(EC 1.4.3.5) that is involved in the formation of pyridoxal 5'-phosphate (member of the vitamin B6 group)
Computational
Description (TAIR10)
pyridoxin (pyrodoxamine) 5'-phosphate oxidase (PPOX); CONTAINS InterPro DOMAIN/s: YjeF-related protein, N-terminal (InterPro:IPR004443), FMN-binding split barrel (InterPro:IPR012349), Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain (InterPro:IPR011576), FMN-binding split barrel, related (InterPro:IPR009002), Pyridoxamine 5'-phosphate oxidase, rossman domain-containing, predicted, plant (InterPro:IPR021198), Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal (InterPro:IPR019576), Pyridoxamine 5'-phosphate oxidase (InterPro:IPR000659), Pyridoxamine 5'-phosphate oxidase, conserved site (InterPro:IPR019740); Has 8784 Blast hits to 8784 proteins in 2051 species: Archae - 190; Bacteria - 5236; Metazoa - 351; Fungi - 311; Plants - 42; Viruses - 0; Other Eukaryotes - 2654 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G49970-MONOMERBioCyc:MetaCyc:MONOMER-17901BRENDA:5.1.99.6EC:1.4.3.5
EC:5.1.99.-eggNOG:COG0062eggNOG:COG0259eggNOG:KOG2585
eggNOG:KOG2586EMBL:AB024032EMBL:AY088368EMBL:AY127025
EMBL:BT000605EMBL:CP002688EnsemblPlants:AT5G49970EnsemblPlants:AT5G49970.1
entrez:835061Gene3D:2.30.110.10Gene3D:3.40.50.10260GeneID:835061
Genevisible:Q9LTX3GO:GO:0004733GO:GO:0005739GO:GO:0005829
GO:GO:0006734GO:GO:0006739GO:GO:0008615GO:GO:0009507
GO:GO:0010181GO:GO:0042823GO:GO:0046872GO:GO:0052856
GO:GO:0052857gramene_pathway:1.4.3.5gramene_pathway:PLPSAL-PWYgramene_plant_reactome:1119534
gramene_plant_reactome:1119594gramene_plant_reactome:6875606gramene_plant_reactome:6876504HAMAP:MF_01629
HAMAP:MF_01966hmmpanther:PTHR13232hmmpanther:PTHR13232:SF10HOGENOM:HOG000243404
InterPro:IPR000659InterPro:IPR004443InterPro:IPR011576InterPro:IPR012349
InterPro:IPR019576InterPro:IPR019740InterPro:IPR021198InterPro:IPR032976
KEGG:00750+1.4.3.5KEGG:ath:AT5G49970KO:K00275KO:K17759
OMA:FWQGQKSPANTHER:PTHR13232PaxDb:Q9LTX3Pfam:PF01243
Pfam:PF03853Pfam:PF10590Pfam:Q9LTX3Pfscan:PS51385
PhylomeDB:Q9LTX3PIRSF:PIRSF037048PRIDE:Q9LTX3PRO:PR:Q9LTX3
PROSITE:PS01064PROSITE:PS51385ProteinModelPortal:Q9LTX3Proteomes:UP000006548
RefSeq:NP_568717.2RefSeq:NP_974918.1scanprosite:PS01064SMR:Q9LTX3
STRING:3702.AT5G49970.1SUPFAM:SSF50475SUPFAM:SSF64153TAIR:AT5G49970
tair10-symbols:ATPPOXtair10-symbols:PDX3tair10-symbols:PPOXTIGRfam:TIGR00197
TIGRfam:TIGR00558TIGRFAMs:TIGR00197TIGRFAMs:TIGR00558UniGene:At.28155
unipathway:UPA00190UniPathway:UPA01068UniProt:Q9LTX3
Coordinates (TAIR10) chr5:+:20329213..20332900
Molecular Weight (calculated) 59379.00 Da
IEP (calculated) 7.40
GRAVY (calculated) -0.36
Length 530 amino acids
Sequence (TAIR10)
(BLAST)
001: MRNVIRRVTT MTFTFLLQSP PLPISPSPPQ FSLSSSPLSK TQRFITPSQG SRLRTLCTKV IIPNMQDSGS PPLSYLTQRE AAEIDETLMG PLGFSIDQLM
101: ELAGLSVAAS IAEVYKPEEY SRVLAICGPG NNGGDGLVAA RHLHHFGYKP FICYPKRTAK PLYTGLVTQL DSLSVPFVSV EDLPDDLSKD FDVIVDAMFG
201: FSFHGAPRPP FDDLIRRLVS LQNYEQTLQK HPVIVSVDIP SGWHVEEGDH EDGGIKPDML VSLTAPKLCA KRFRGPHHFL GGRFVPPSVA EKYKLELPSY
301: PGTSMCVRIG KPPKVDISAM RVNYVSPELL EEQVETDPTV QFRKWFDEAV AAGLRETNAM ALSTANKDKK PSSRMVLLKG FDENGFVWFT NYESKKGSDL
401: SENPSAALLF YWEILNRQVR IEGPVERIPE SESENYFHSR PRGSQIGAIV SKQSSVVPGR HVLYDEYEEL TKQYSDGSVI PKPKNWGGFR LKPNLFEFWQ
501: GQPSRLHDRL QYSLQDVNGN PAWKIHRLAP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)