AT5G49580.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.584 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Chaperone DnaJ-domain superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Chaperone DnaJ-domain superfamily protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: Chaperone DnaJ-domain superfamily protein (TAIR:AT1G16680.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:20123823..20126813 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 77977.90 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.86 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.40 | ||||||||||||||||||||||||||||||||||||
| Length | 695 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MARKGSHQKN GMDNQTKQKK KTASDSLLSN KGQGKNNEAE SVLKENCQDD KQTKSSPVCE TLERDMDEAK GAASLKDIDQ SVASESDLAG GSRPRNEPGF 101: TTEETRYIPF GREHIDSVMR SLLDILSTNS PSENIELAYN AVLRKLRIST ATVSREMTKC MERHRPLIDS VKLRVYKGRD LVLTKMRQVF PVVFRWLMHF 201: GSIILLLSLV WLDCAIRGFD SFIRMGTASF FSIMWCGLFS AFSMFGMTKF ILISVATVLV ALFIGFVVGS VTLAISGLVL LWLYGSFWTT LLFLFFGGLA 301: FMMKHERVAL FIITVYSVYS ALSYVGWLGL LLAFNLAFIS TDALIYFFKN KINQQSTADR PTEPVNDSSF ENGPGFPGDR GPGVASTSGT DSELTSEDEI 401: ARLLNCPDHY SALGLARYGN VDMAYLKREY RKKAMLVHPD KNMGNERAAE AFKKLQNAYE VLLDSVKQKS YDDELKREEL LNYFRRFQNS SQKDTRGHGF 501: SGSGFGSSEG EGEEAFRECR QIACKKCGNL HAWFLTKKSK STARWCQDCK EFHQAKDGDG WVEQASQHVL FGLFQKVDMP RAYVCADSKI YEASQWYICQ 601: GMRCPANTHK PSFHVNMNAT AAKRGTSGSS GQKGNQRMPN TNPDETMTEE EFYEWLQNAV QSGMFDNARE NPSSATASST SSSSSKKKKK GKKQW |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)