AT5G49220.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Protein of unknown function (DUF789) | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||
| Computational Description (TAIR10) |
Protein of unknown function (DUF789); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF789 (InterPro:IPR008507); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF789) (TAIR:AT4G16100.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:+:19956627..19958453 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 45815.00 Da | ||||||||||||||||||||||||
| IEP (calculated) | 7.10 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.57 | ||||||||||||||||||||||||
| Length | 409 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSGSGGVSIA RTAIRGENRF YNPPPMRRMQ QEAQLQQQIR EKQRRDDEDE VLMDKERRKA ATVAPRTTRK GLGVSESKSR VVVSGSEVCA GSSDSSSGSG 101: RVLSDGSNLD RFLEHTTPVV PARLFPMRSR WELKTRESDC HTYFVLEDLW ESFAEWSAYG AGVPLEMHPL EMHGNDSTVQ YYVPYLSGIQ LYVDPLKKPR 201: NPVGDNEGSS EGSSNSRTLP VDLSVGELNR ISLKDQSITG SLSSGEAEIS NPQGRLLFEY LEYEPPFGRE PLANKISDLA SRVPELMTYR SCDLLPSSWV 301: SVSWYPIYRI PVGPTLQNLD ACFLTFHSLS TAPPQSAMGC SDSQPSTKLP LPTFGLASYK LKVSVWNQNR IQESQKMTSL LQAADKWLKR LQVDHPDYRF 401: FTSNSPQMR |
||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)