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AT5G48560.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT3G07340.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:20158eggNOG:ENOG410IHY1eggNOG:ENOG4111T9VEMBL:AB015468
EMBL:AF488610EMBL:BT002945EMBL:BT005637EMBL:CP002688
EnsemblPlants:AT5G48560EnsemblPlants:AT5G48560.1entrez:834912Gene3D:4.10.280.10
GeneID:834912Genevisible:Q9FJL4GO:GO:0003677GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0006355GO:GO:0009637
Gramene:AT5G48560.1hmmpanther:PTHR12565hmmpanther:PTHR12565:SF154HOGENOM:HOG000238007
InParanoid:Q9FJL4IntAct:Q9FJL4InterPro:IPR011598iPTMnet:Q9FJL4
KEGG:ath:AT5G48560ncoils:CoilOMA:FNGRTNTPaxDb:Q9FJL4
Pfam:PF00010Pfam:Q9FJL4Pfscan:PS50888PhylomeDB:Q9FJL4
PRIDE:Q9FJL4PRO:PR:Q9FJL4PROSITE:PS50888ProteinModelPortal:Q9FJL4
Proteomes:UP000006548RefSeq:NP_199667.1SMART:SM00353SMR:Q9FJL4
STRING:3702.AT5G48560.1SUPFAM:SSF47459TAIR:AT5G48560UniGene:At.43769
UniProt:Q9FJL4
Coordinates (TAIR10) chr5:+:19684160..19686871
Molecular Weight (calculated) 54881.00 Da
IEP (calculated) 6.31
GRAVY (calculated) -0.83
Length 498 amino acids
Sequence (TAIR10)
(BLAST)
001: MDNELFMNTE FPPPPEMATH FEHQQSSSSA MMLNWALMDP NPHQDSSFLW EKSTEQQQQQ SIFDSALSSL VSSPTPSNSN FSGGGGDGFL IRELIGKLGN
101: IGNNNNNSGE IYGTPMSRSA SCYATPMSSP PPPTNSNSQM MMNRTTPLTE FSADPGFAER AARFSCFGSR SFNGRTNTNL PINNGNNMVN NSGKLTRVSS
201: TPALKALVSP EVTPGGEFSR KRKSVPKGKS KENPISTASP SPSFSKTAEK NGGKGGSKSS EEKGGKRRRE EEDDEEEEGE GEGNKSNNTK PPEPPKDYIH
301: VRARRGQATD SHSLAERVRR EKIGERMKLL QDLVPGCNKV TGKALMLDEI INYVQSLQRQ VEFLSMKLSS VNDTRLDFNV DALVSKDVMI PSSNNRLHEE
401: GLQSKSSSHH HQQQLNIYNN NSQLLPNISS NNMMLQSPMN SLETSTLARS FTHLPTLTQF TDSISQYQMF SEEDLQSIVG MGVAENPNNE SQHMKIEL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)