AT5G45520.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Leucine-rich repeat (LRR) family protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Leucine-rich repeat (LRR) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT5G45500.2); Has 114257 Blast hits to 60762 proteins in 2527 species: Archae - 487; Bacteria - 15441; Metazoa - 40449; Fungi - 11815; Plants - 11661; Viruses - 687; Other Eukaryotes - 33717 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:18449509..18453012 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 132589.00 Da | ||||||||||||||||||||||||
| IEP (calculated) | 5.37 | ||||||||||||||||||||||||
| GRAVY (calculated) | -1.05 | ||||||||||||||||||||||||
| Length | 1167 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MSTKECDIYK IINILSQLDS DLKKIPVSDK VISHKEQQGE PSEEKRSWWV RVRGSLKRIG KAKKEAFNNA SDSGGSQGGS RRSVQNIEED QKNEDLEIRK 0101: LQNDIRQMIA AFKNLTQFQT DMSKNLERDL RSTKLIAILQ KKNSFGSRSH VVKEIRRKVS ALKCQIPSLL HKQSSRKISI TDSQTAEEND EISETGIDIY 0201: LPGLHFSEKF KTSSAFEEVV EKFQGLDDFT QKLCLLSFAV FPENREVKRT MLMYWWIGEG FISCDDSENL VTRILDSFSD KKLLEPVEDE RKLLPSSYKM 0301: EPHVHSAVIY LAKEMDLFEL YNKNGKLIMK KSSKKKVCLV KGSSLLRDAK TSVMEPKTLQ TVFNSSERYP DFTFKWFPLM DSLRVLYLGR WEQTAKRHIE 0401: VESTEFLKNM KSLKNLRLAS FQGISRIERL ENSICALPEL VILDLKACYN LEVLPSDIGL FEKLIYLDVS ECYMLDRMPK GIAKLSRLQV LKGFVISESD 0501: HENNCAVKHL VNLRKLSITV NKYSFKVESL MESLTGLQGL ESLKIAWGAC EEPNEAVESR ETTNEKKENQ GGLATDKKLK DLMEREDDQV QNYGQTSKEE 0601: KGNVEETGKQ EDGDQGDGIN EEANLEDGKK HDEGKEERSL KSDEVVEEEK KTSPSEEATE KFQNKPGDQK GKSNVEGDGD KGKADLEEEK KQDEVEAEKS 0701: KSDEIVEGEK KPDDKSKVEK KGDGDKENAD LDEGKKRDEV EAKKSESGKV VEGDGKESPP QESIDTIQNM TDDQTKVEKE GDRDKGKVDP EEGKKHDEVE 0801: GGIWKSDNGV EGVDKASPSR ESTDAIENKP DDHQRGDKQE EKGDGEKEKV NLEEWKKHDE IKEESSKQDN VTGGDVKKSP PKESKDTMES KRDDQKENSK 0901: VQEKGDVDKG KAADLDEGKK ENDVKAESSK SDKVIEGDEE KNPPQKSKDI IQSKPDDHRE ISKVQEKVDG EKNGDDLKKL DGGGEAKTQK SRKTTKFGKN 1001: VSDHPKRDNT MAEDIHETQS PSRKSKSSKA KWLTGRGNQT KKWGIGWQED PVVDDTYTLP SNLKKLELEC FPETKPPSWL NPKDLKNLKK LSIKGGKLSR 1101: IGDESRITED KWDVEILRLK YLHEFKVEWR DLQTLFPKMT LLEKYKCPKI AFCPTDGNGV WTSSPNM |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)