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AT5G44930.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.550
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Exostosin family protein
Curator
Summary (TAIR10)
Encodes a putative arabinosyltransferase.
Computational
Description (TAIR10)
ARABINAN DEFICIENT 2 (ARAD2); FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: Exostosin family protein (TAIR:AT2G35100.1); Has 1289 Blast hits to 1285 proteins in 100 species: Archae - 0; Bacteria - 0; Metazoa - 246; Fungi - 4; Plants - 990; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).
Protein Annotations
BioGrid:19772CAZy:GT47EC:2.4.2.-eggNOG:ENOG410XTFH
eggNOG:KOG1021EMBL:AB010693EMBL:AY048259EMBL:BT002634
EMBL:CP002688EMBL:KJ138648EnsemblPlants:AT5G44930EnsemblPlants:AT5G44930.1
EnsemblPlants:AT5G44930.2entrez:834523GeneID:834523Genevisible:Q9FLA5
GO:GO:0000139GO:GO:0005794GO:GO:0009832GO:GO:0016021
GO:GO:0016757GO:GO:0035884GO:GO:0071555Gramene:AT5G44930.1
Gramene:AT5G44930.2hmmpanther:PTHR11062hmmpanther:PTHR11062:SF50HOGENOM:HOG000238383
InParanoid:Q9FLA5InterPro:IPR004263KEGG:ath:AT5G44930OMA:RYFDYTH
PaxDb:Q9FLA5Pfam:PF03016Pfam:Q9FLA5PhylomeDB:Q9FLA5
PRIDE:Q9FLA5PRO:PR:Q9FLA5ProteinModelPortal:Q9FLA5Proteomes:UP000006548
RefSeq:NP_199306.1RefSeq:NP_851132.1STRING:3702.AT5G44930.1TAIR:AT5G44930
tair10-symbols:ARAD2TMHMM:TMhelixUniGene:At.9153UniProt:Q9FLA5
Coordinates (TAIR10) chr5:-:18140626..18142144
Molecular Weight (calculated) 50999.60 Da
IEP (calculated) 9.94
GRAVY (calculated) -0.37
Length 443 amino acids
Sequence (TAIR10)
(BLAST)
001: MNPKIRKPNN SSSKKVTVSV LSVFLVFVFV NTFFYPSFYS DSGSIRRNLV DSRESFHFPG NFRKTKVYMY ELPTNFTYGV IEQHGGEKSD DVTGLKYPGH
101: QHMHEWYLYS DLTRPEVKRV GSPIVRVFDP AEADLFYVSA FSSLSLIVDS GRPGFGYSDE EMQESLVSWL ESQEWWRRNN GRDHVIVAGD PNALKRVMDR
201: VKNAVLLVTD FDRLRADQGS LVKDVIIPYS HRIDAYEGEL GVKQRTNLLF FMGNRYRKDG GKVRDLLFKL LEKEEDVVIK RGTQSRENMR AVKQGMHTSK
301: FCLHLAGDTS SACRLFDAIA SLCVPVIVSD GIELPFEDVI DYRKFSIFLR RDAALKPGFV VKKLRKVKPG KILKYQKVMK EVRRYFDYTH LNGSVNEIWR
401: QVTKKIPLIK LMINREKRMI KRDGSDPQCS CLCSNQTGII HGV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)