AT5G44930.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:golgi 0.550 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Exostosin family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Encodes a putative arabinosyltransferase. | ||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
ARABINAN DEFICIENT 2 (ARAD2); FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: Exostosin family protein (TAIR:AT2G35100.1); Has 1289 Blast hits to 1285 proteins in 100 species: Archae - 0; Bacteria - 0; Metazoa - 246; Fungi - 4; Plants - 990; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr5:-:18140626..18142144 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 50999.60 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 9.94 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.37 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 443 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MNPKIRKPNN SSSKKVTVSV LSVFLVFVFV NTFFYPSFYS DSGSIRRNLV DSRESFHFPG NFRKTKVYMY ELPTNFTYGV IEQHGGEKSD DVTGLKYPGH 101: QHMHEWYLYS DLTRPEVKRV GSPIVRVFDP AEADLFYVSA FSSLSLIVDS GRPGFGYSDE EMQESLVSWL ESQEWWRRNN GRDHVIVAGD PNALKRVMDR 201: VKNAVLLVTD FDRLRADQGS LVKDVIIPYS HRIDAYEGEL GVKQRTNLLF FMGNRYRKDG GKVRDLLFKL LEKEEDVVIK RGTQSRENMR AVKQGMHTSK 301: FCLHLAGDTS SACRLFDAIA SLCVPVIVSD GIELPFEDVI DYRKFSIFLR RDAALKPGFV VKKLRKVKPG KILKYQKVMK EVRRYFDYTH LNGSVNEIWR 401: QVTKKIPLIK LMINREKRMI KRDGSDPQCS CLCSNQTGII HGV |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)