suba logo
AT5G43820.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
mitochondrion 0.643
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G15010.1); Has 33976 Blast hits to 11353 proteins in 260 species: Archae - 0; Bacteria - 8; Metazoa - 169; Fungi - 383; Plants - 32575; Viruses - 0; Other Eukaryotes - 841 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AB026651EMBL:CP002688
EnsemblPlants:AT5G43820EnsemblPlants:AT5G43820.1entrez:834404Gene3D:1.25.40.10
GeneID:834404Gramene:AT5G43820.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF378
HOGENOM:HOG000083165InParanoid:P0C8R0InterPro:IPR002885InterPro:IPR011990
KEGG:ath:AT5G43820OMA:WDEMQESPaxDb:P0C8R0Pfam:P0C8R0
Pfam:PF01535Pfam:PF13041Pfscan:PS51375PhylomeDB:P0C8R0
PRIDE:P0C8R0PRO:PR:P0C8R0PROSITE:PS51375ProteinModelPortal:P0C8R0
Proteomes:UP000006548RefSeq:NP_199195.4SMR:P0C8R0STRING:3702.AT5G43820.1
TAIR:AT5G43820TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.74492
UniProt:P0C8R0
Coordinates (TAIR10) chr5:+:17618948..17620588
Molecular Weight (calculated) 61301.10 Da
IEP (calculated) 7.90
GRAVY (calculated) -0.11
Length 546 amino acids
Sequence (TAIR10)
(BLAST)
001: MLRRWNIVIE SLRRVHSSDL ENLISASLYN RTLCTASESL NHGVVDESYV LAELSSLLPI SSNKTSVSKE DSSSKNQVAI DSFLSAEDKL RGVFLQKLKG
101: KSAIQKSLSS LGIGLSIDIV ADVLNRGNLS GEAMVTFFDW AVREPGVTKD VGSYSVILRA LGRRKLFSFM MDVLKGMVCE GVNPDLECLT IAMDSFVRVH
201: YVRRAIELFE ESESFGVKCS TESFNALLRC LCERSHVSAA KSVFNAKKGN IPFDSCSYNI MISGWSKLGE VEEMEKVLKE MVESGFGPDC LSYSHLIEGL
301: GRTGRINDSV EIFDNIKHKG NVPDANVYNA MICNFISARD FDESMRYYRR MLDEECEPNL ETYSKLVSGL IKGRKVSDAL EIFEEMLSRG VLPTTGLVTS
401: FLKPLCSYGP PHAAMVIYQK SRKAGCRISE SAYKLLLKRL SRFGKCGMLL NVWDEMQESG YPSDVEVYEY IVDGLCIIGH LENAVLVMEE AMRKGFCPNR
501: FVYSRLSSKL MASNKTELAY KLFLKIKKAR ATENARSFWR SNGWHF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)