AT5G43820.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.643 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G15010.1); Has 33976 Blast hits to 11353 proteins in 260 species: Archae - 0; Bacteria - 8; Metazoa - 169; Fungi - 383; Plants - 32575; Viruses - 0; Other Eukaryotes - 841 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:17618948..17620588 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 61301.10 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.90 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.11 | ||||||||||||||||||||||||||||||||||||||||
| Length | 546 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLRRWNIVIE SLRRVHSSDL ENLISASLYN RTLCTASESL NHGVVDESYV LAELSSLLPI SSNKTSVSKE DSSSKNQVAI DSFLSAEDKL RGVFLQKLKG 101: KSAIQKSLSS LGIGLSIDIV ADVLNRGNLS GEAMVTFFDW AVREPGVTKD VGSYSVILRA LGRRKLFSFM MDVLKGMVCE GVNPDLECLT IAMDSFVRVH 201: YVRRAIELFE ESESFGVKCS TESFNALLRC LCERSHVSAA KSVFNAKKGN IPFDSCSYNI MISGWSKLGE VEEMEKVLKE MVESGFGPDC LSYSHLIEGL 301: GRTGRINDSV EIFDNIKHKG NVPDANVYNA MICNFISARD FDESMRYYRR MLDEECEPNL ETYSKLVSGL IKGRKVSDAL EIFEEMLSRG VLPTTGLVTS 401: FLKPLCSYGP PHAAMVIYQK SRKAGCRISE SAYKLLLKRL SRFGKCGMLL NVWDEMQESG YPSDVEVYEY IVDGLCIIGH LENAVLVMEE AMRKGFCPNR 501: FVYSRLSSKL MASNKTELAY KLFLKIKKAR ATENARSFWR SNGWHF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)