AT5G43160.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Family of unknown function (DUF566) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Family of unknown function (DUF566) ; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF566 (InterPro:IPR007573); BEST Arabidopsis thaliana protein match is: Family of unknown function (DUF566) (TAIR:AT3G19570.2); Has 205 Blast hits to 204 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 201; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:17329275..17330736 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 28705.20 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 10.03 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.06 | ||||||||||||||||||||||||||||
| Length | 261 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNAALSSPRG TSIARGLSPS REVVPPRGVS PSDRMSPLRV RSSLSKNTPL IPHFAVDGKE KIRDNGVADA HLLRLLHSRL LQWQFANARA NAVISSQKMR 101: EERRLYNAWR SISNLYNSVS MKRIEMQHLK QNLKLISILN MQMGHLEEWL VIDRNYMGSL VGAAEALKGS TLCLPVDCGA MVNVQSVKDA ICSAVDVMQA 201: MASSICLLLP KVGKISSLAA ELGRVNAKDE GMLDVCRDLL NTISALQVTE CSLRTQVTQL Q |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)