AT3G58940.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.527 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : F-box/RNI-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
F-box/RNI-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT3G58930.1); Has 1892 Blast hits to 1858 proteins in 32 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 2; Plants - 1882; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:21781002..21783213 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 70851.90 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.41 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.41 | ||||||||||||||||||||||||||||||||||||||||
| Length | 618 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDRVSNLPEE VRCHILSFLP TKHAALTSVL SKSWLNLWKF ETNLDIDDSD FLHPEEGKAE RDEIRQSFVE FVDGVLALQG DSPIEKFSLK CITGIHPDHV 101: NRWICNVLQR GVSDLYLFTD FSDEDTEEDG GYRLPQEMFV SRTLVKLKLR SEHCVNWWHW DIGASLPNLK SLNIDSDLIF FGEMEKFLSS FPVLEEVHMA 201: NMEWRELDET MSSASLTKLS IHGTGVEEFE HPKSISIDTP NLLYLNYSDL VAEDYPLDDE GDVVLQFCNV VKLINGIQNI QTLYLTEDTL EVLTMCCESM 301: PVFNNLKTLG LKSDEGRGWQ AVPALLRNCP HLEFLIIEGL LHSVTDKCGD ACDCISREDK GRSLISCPVK KLEVRGFRGT IREKEMIRHF LEYFPCLDEM 401: EIDAEENDST NFEVPRILKV VAYRLHDVVS TEIVGHWQSS AQSGGWSQTQ MDEMYYELAP RNKERIYDMF FFMRRASSTV PPPPPQEMSQ DYLQMQLEVA 501: DLKERQRDQE AKLADLKERL RAMLDMIVDQ NPIIASALRA REATNSEREK ASSGQEMTEK ERDYDALFDI IVEQNPMLAS AVRALRATDS ERAETSSNQE 601: MTELGQATAT YFPPREGE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)