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AT5G42920.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30447334 (2019): plasma membrane
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : THO complex, subunit 5
Curator
Summary (TAIR10)
Encodes a component of the putative Arabidopsis THO/TREX complex: THO1 or HPR1 (At5g09860), THO2 (At1g24706), THO3 or TEX1 (At5g56130), THO5 (At5g42920, At1g45233), THO6 (At2g19430), and THO7 (At5g16790, At3g02950). THO/TREX complexes in animals have been implicated in the transport of mRNA precursors. Mutants of THO3/TEX1, THO1, THO6 accumulate reduced amount of small interfering (si)RNA, suggesting a role of the putative Arabidopsis THO/TREX in siRNA biosynthesis.
Computational
Description (TAIR10)
THO5; CONTAINS InterPro DOMAIN/s: THO complex, subunit 5 (InterPro:IPR019163); BEST Arabidopsis thaliana protein match is: THO complex, subunit 5 (TAIR:AT1G45233.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:19554eggNOG:ENOG410YCE5eggNOG:KOG2216EMBL:AB008264
EMBL:AY039925EMBL:AY091346EMBL:CP002688EnsemblPlants:AT5G42920
EnsemblPlants:AT5G42920.1EnsemblPlants:AT5G42920.2entrez:834304ExpressionAtlas:F4K4J0
GeneID:834304Genevisible:F4K4J0GO:GO:0000347GO:GO:0003723
GO:GO:0006397GO:GO:0008380GO:GO:0051028hmmpanther:PTHR13375
hmmpanther:PTHR13375:SF3HOGENOM:HOG000239526InParanoid:F4K4J0IntAct:F4K4J0
InterPro:IPR019163iPTMnet:F4K4J0KEGG:ath:AT5G42920KO:K13174
ncoils:CoilOMA:HRKMISWPaxDb:F4K4J0Pfam:PF09766
PRIDE:F4K4J0PRO:PR:F4K4J0ProteinModelPortal:F4K4J0Proteomes:UP000006548
RefSeq:NP_568616.1RefSeq:NP_974873.1STRING:3702.AT5G42920.2TAIR:AT5G42920
tair10-symbols:AtTHO5tair10-symbols:THO5UniGene:At.6525UniProt:Q94BS3
Coordinates (TAIR10) chr5:-:17206310..17209106
Molecular Weight (calculated) 79292.20 Da
IEP (calculated) 6.77
GRAVY (calculated) -0.60
Length 702 amino acids
Sequence (TAIR10)
(BLAST)
001: MYEKSHYVKA IKACRDFKSK YPDIDLVPEQ DFFRHAPEAI KDQSLSSDSS HVLMPKRLNF ELHQRKELCK HRARLEQQKK SLLETIAERK KFLSSLPLHL
101: KSLKKASLPV QNHLGIQHTK KLKQHNLAEL LPPPLYVLYS QLLAQKEAFE ESIELEVVGS LKDAQAYARQ QSRKDSGMSS NTESSRLEDD GPDDDDDGQR
201: RRKRPKKLTS KEGSDKAGLY QVHPLKIVLH IYDDEIPDTK SLKLVILKFE YLLKLNVVCV GAEGSQDGPE KNIFCNLFPD DAGLEPPHQS TKLILGDGQT
301: FDENRTSRPY KWVQHLAGID ISPVLLGQEA HNTDPAKSDT FVPDLSLYRQ QHRVQTVLRR IRLRKKAHLA LAEQLDLLMK HELPVVNCED APWALHKVLC
401: ALDSWLHIQS SASKSCSLTL NSVEQVPEPM EIDVDGRSIS GKEDFESIRE DGELPSLVTA AASLTSSNHT PSKVSNQARS RQLALMTKNL DSPISKGKSP
501: SFKKYEDDLD LVLDDDSEID EPTGRTEAHV EELCPEKADN SWVDYGSREF ALVFSRKTDG GKLWKLEAMV QISMEYPLRP PLFSLSLHAS SSSGNENGTN
601: ESDHYNELRA MEAEVNLHML KIIPSDQENY LLSHQIRCLA MLFDYYVDDP SPDSKRGTAT TVVDVGLCKP VDGKLLVRSF RGRDHRKMIS WKGRGCASGY
701: PC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)