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AT5G42540.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:22550958 (2012): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : exoribonuclease 2
Curator
Summary (TAIR10)
Encodes a protein with similarity to yeast 5'-3'exonucleases and can functionally complement the yeast mutations. In Arabidopsis XRN2 acts as a suppressor of posttranscriptional gene silencing.
Computational
Description (TAIR10)
exoribonuclease 2 (XRN2); CONTAINS InterPro DOMAIN/s: 5'-3' exoribonuclease 2 (InterPro:IPR017151), Zinc finger, CCHC-type (InterPro:IPR001878), Putative 5-3 exonuclease (InterPro:IPR004859); BEST Arabidopsis thaliana protein match is: 5'-3' exoribonuclease 3 (TAIR:AT1G75660.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
EC:3.1.13.-eggNOG:COG5049eggNOG:KOG2044EMBL:AB022210
EMBL:AF286720EMBL:AF367296EMBL:AK176100EMBL:AK220711
EMBL:AK220893EMBL:AK221968EMBL:AY091687EMBL:CP002688
EnsemblPlants:AT5G42540EnsemblPlants:AT5G42540.1entrez:834261ExpressionAtlas:Q9FQ02
GeneID:834261Genevisible:Q9FQ02GO:GO:0003676GO:GO:0004534
GO:GO:0005634GO:GO:0006397GO:GO:0008270hmmpanther:PTHR12341
hmmpanther:PTHR12341:SF30HOGENOM:HOG000205514InterPro:IPR001878InterPro:IPR004859
InterPro:IPR017151InterPro:IPR027073iPTMnet:Q9FQ02ncoils:Coil
PANTHER:PTHR12341PaxDb:Q9FQ02Pfam:PF00098Pfam:PF03159
Pfam:Q9FQ02Pfscan:PS50158PhylomeDB:Q9FQ02PIRSF:PIRSF037239
PRIDE:Q9FQ02PRO:PR:Q9FQ02PROSITE:PS50158ProteinModelPortal:Q9FQ02
Proteomes:UP000006548RefSeq:NP_199069.1SMART:SM00343SMR:Q9FQ02
STRING:3702.AT5G42540.2SUPFAM:SSF57756TAIR:AT5G42540tair10-symbols:AtXRN2
tair10-symbols:XRN2UniGene:At.16936UniProt:Q9FQ02
Coordinates (TAIR10) chr5:+:17007513..17014534
Molecular Weight (calculated) 116392.00 Da
IEP (calculated) 9.29
GRAVY (calculated) -0.64
Length 1012 amino acids
Sequence (TAIR10)
(BLAST)
0001: MGVPSFYRWL IQRYPLTIQE VIEEEPLEVN GGGVTIPIDS SKPNPNGYEY DNLYLDMNGI IHPCFHPEDK PSPTTFTEVF QCMFDYIDRL FVMVRPRKLL
0101: FMAIDGVAPR AKMNQQRARR FRAAKDAAEA AAEEEQLREE FEREGKKLPP KVDSQVFDSN VITPGTEFMA TLSFALRYYI HVRLNSDPGW KNIKVILSDA
0201: NVPGEGEHKI MSYIRCNKNH PGYNPNTHHC LYGLDADLIM LSLATHEIHF SILREVVFFP GEEGKCFLCG QEGHRAADCE GKIKRKTGEM LDNTEADVVV
0301: KKPYEFVNIW ILREYLEHDM QIPGAKKNLD RLIDDFIFIC FFVGNDFLPH MPTLEIREGA IELLMSVYKN KFRSAKKYLT DSSKLNLRNV ERFIKAVGMY
0401: ENQIFQKRAQ VQQRQSERFR RDKARDKARD NARDNAQASR QFSGKLVQLD SLDEVSDSLH SSPSRKYLRL SLDDNIGVAN VETENSLKAE ELDNEEDLKF
0501: KLKKLLRDKG DGFRSGNGEQ DKVKLNKVGW RERYYEEKFA AKSVEEMEQI RRDVVLKYTE GLCWIMHYYY HGVCSWNWFY PYHYAPFASD LKGLEKLDIK
0601: FELGSPFKPF NQLLAVLPSA SAHALPECYR SLMTNPDSPI ADFYPADFEI DMNGKRYSWQ GISKLPFVEE KRLLEAAAQV EKSLTNEEIR RNSALFDMLF
0701: VVASHPLGEL IRSLNSRTNN LSNEERATII EKIDPGLSDG MNGYIASCGG DSQPSCFCST VEGMEDVLTN QVICAIYKLP EDIRGSEITH QIPRLAIPKK
0801: TISLVDLKSG GLLWHEDGDK RRAPPKVIKI KRYNPEGSIS GGRLGKASHR LVLQTINAQP DYMNINSEPA LCPNTVFQNE RVPKKIPTFK DNGIQWISPP
0901: PSQITPKKMN SPQRQKAWKK DETPQSREKS KKLKSSLKVN PLKMKKTKSP QREFTREKKK ENITPQRKLT KAQRQVKHIR MMEEAKMIKQ RKKEKYLRKK
1001: AKYAQGAPPK TA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)