AT5G40405.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G66520.1); Has 34577 Blast hits to 13703 proteins in 254 species: Archae - 0; Bacteria - 3; Metazoa - 86; Fungi - 90; Plants - 33863; Viruses - 0; Other Eukaryotes - 535 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:16169315..16171153 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 68875.20 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.42 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.16 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 612 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSRIGKHPAI ALLDSGITFK EVRQIHAKLY VDGTLKDDHL VGHFVKAVAL SDHKYLDYAN QILDRSEKPT LFALNSMIRA HCKSPVPEKS FDFYRRILSS 101: GNDLKPDNYT VNFLVQACTG LRMRETGLQV HGMTIRRGFD NDPHVQTGLI SLYAELGCLD SCHKVFNSIP CPDFVCRTAM VTACARCGDV VFARKLFEGM 201: PERDPIAWNA MISGYAQVGE SREALNVFHL MQLEGVKVNG VAMISVLSAC TQLGALDQGR WAHSYIERNK IKITVRLATT LVDLYAKCGD MEKAMEVFWG 301: MEEKNVYTWS SALNGLAMNG FGEKCLELFS LMKQDGVTPN AVTFVSVLRG CSVVGFVDEG QRHFDSMRNE FGIEPQLEHY GCLVDLYARA GRLEDAVSII 401: QQMPMKPHAA VWSSLLHASR MYKNLELGVL ASKKMLELET ANHGAYVLLS NIYADSNDWD NVSHVRQSMK SKGVRKQPGC SVMEVNGEVH EFFVGDKSHP 501: KYTQIDAVWK DISRRLRLAG YKADTTPVMF DIDEEEKEDA LCLHSEKAAI AFGIMSLKED VPIRIVKNLR VCGDCHQVSM MISKIFNREI IVRDRNRFHH 601: FKDGHCSCNG FW |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)