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AT5G40100.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.888
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Disease resistance protein (TIR-NBS-LRR class) family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: plasma membrane, chloroplast envelope; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT1G17600.1); Has 24326 Blast hits to 16698 proteins in 825 species: Archae - 27; Bacteria - 1798; Metazoa - 3353; Fungi - 279; Plants - 18146; Viruses - 2; Other Eukaryotes - 721 (source: NCBI BLink).
Protein Annotations
EMBL:CP002688EnsemblPlants:AT5G40100EnsemblPlants:AT5G40100.1entrez:834007
Gene3D:3.40.50.10140Gene3D:3.40.50.300Gene3D:3.80.10.10GeneID:834007
GO:GO:0005886GO:GO:0007165GO:GO:0009941GO:GO:0043531
Gramene:AT5G40100.1hmmpanther:PTHR11017hmmpanther:PTHR11017:SF169InParanoid:F4KFY5
InterPro:IPR000157InterPro:IPR002182InterPro:IPR011713InterPro:IPR011991
InterPro:IPR027417InterPro:IPR032675KEGG:ath:AT5G40100OMA:LNIRRFS
PaxDb:F4KFY5Pfam:PF00931Pfam:PF01582Pfam:PF07725
Pfscan:PS50104PRIDE:F4KFY5PROSITE:PS50104ProteinModelPortal:F4KFY5
Proteomes:UP000006548RefSeq:NP_198826.1SMART:SM00255SMR:F4KFY5
STRING:3702.AT5G40100.1SUPFAM:SSF46785SUPFAM:SSF52058SUPFAM:SSF52200
SUPFAM:SSF52540TAIR:AT5G40100UniGene:At.30304UniProt:F4KFY5
Coordinates (TAIR10) chr5:+:16043976..16047355
Molecular Weight (calculated) 115282.00 Da
IEP (calculated) 6.80
GRAVY (calculated) -0.23
Length 1017 amino acids
Sequence (TAIR10)
(BLAST)
0001: MASSSASRAS SYDVFLSFRG EDTRHSIVSH LYEALTSRGI ATFKDDKRLE LGDHISEELQ RAIEGSDFVV VVLSENYPTS RWCLMELQSI MELQMEGRLG
0101: VFPVFYRVEP SAVRYQLGSF DLEGYQRDPQ MADMVPKWRQ ALKLIADLSG VASGQCIDEA TMVRKIVEDI SKRKTLKHKI DFRNFVGVDT HLQGLKSLLD
0201: MDSNNDEVRM IGIWGMGGIG KTTIAKCLYD QLSSQFTASY FTQDIKGIHK ELDLLHLQNR LLYNTLGDDI MPWSVEAGRE VIAARLGNHK VLLVLDGVDK
0301: LVQIHALAKE TRWFGRQSRI IITTRDKGLL NSCGVKTIYD VKCLDDKDSL QMFKQIAFEG GSPPSVDFEQ LSIRAARLAH GLPSALQAYA LFLRGRANSP
0401: EEWEEAVCGL ESTPDENIME ILKISYEGLA KAHQNAFLHV ACLFNGDTFR RVTSLLDVSR MESNLWMRVL AEKSLINITS NGYVTLHKLV EQMGREIMLA
0501: SGKFIGDPET IHDTLGMGQT ESISLHICEM TCAFSMATGV FSRMYKLRFL KVYKHVNERE SMLQVIPEDE YPSINCLLLH WDAFPLSKFP LRFNTYCLVE
0601: LNLRHSNLET LWSGVLKFGH LRKLDVTGSK NLKQLPDLSC AEELDELLLE QCKRLKGIPE SIAERSTLGR LNLSYYGGAK NPMGVVIQKV SQTQRITLLF
0701: PTSSVEMQLM NISITGDIRF RVFADFEGYA EYFSFSTEQK IHATRTVSVH QAPRLISELN KSTTLNIRRF SYKENGRPVT LHSFPDIPGL KQLELVNLNI
0801: QKLSDGIGHF EFLENLDLSG NDFENLPEDM NRLSRLKTLC LRNCSKLKEL PELTQVQSLT LSNCKNLRSL VKISDASQDP SLYSLLELCL DNCKNVKSLS
0901: DQLSHFPKLA YLDLSSHDFK KLPSSIRDLT SLVTLCLNNC KKLKSLEELP LSLQFLDAKG CDSLEADDLE HFKGRVNREV SAQPHSARFQ ETEMPSYEQD
1001: HQARKSRLPK FLCCSYF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)