AT5G40090.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.867 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Disease resistance protein (TIR-NBS class) | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Disease resistance protein (TIR-NBS class); FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane, endomembrane system; EXPRESSED IN: shoot apex, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS class) (TAIR:AT1G17610.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:16042115..16043494 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 51658.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.26 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.13 | ||||||||||||||||||||||||||||||||
| Length | 459 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSSASSSSAA SLLLGREVDV FLSFCCQTSH GYFQNILIRN GIRTFLSYRC LEKRFGPIGQ RTLKALEESR VAVVMTSTTK PCSVGFLEEL LVILEFQEKG 101: SLMVIPIFLT DLSFNVEEIC RQHPEKAPSW RTALTKLTNL AAEYPLSQNL AGMDQSDLLN QIARDISLVV FYSGSNDSNA LVAMDRHMKV VYDLLALEVN 201: KEVRTIGIWG SAGVGKTTLA RYIYAEIFVN FQTHVFLDNV ENMKDKLLKF EGEEDPTVII SSYHDGHEIT EARRKHRKIL LIADDVNNME QGKWIIEYAN 301: WFAPGSRVIL ISQNKNLLVD AGVMDVYEVR SLRYDEALQV FSHFAFKQPY PPSDFEELAV RAVHLAGFLP LGLRLLGSFL AGKGREEWVA ALLKLKAKQG 401: GHIMEVWKLM EATDDKGLEE WETAADIVER KESSQDKSQQ ESEVAADILI GKESSQDKQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)