AT2G39300.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55060.1); Has 46416 Blast hits to 28308 proteins in 1743 species: Archae - 734; Bacteria - 4822; Metazoa - 24446; Fungi - 3539; Plants - 2267; Viruses - 163; Other Eukaryotes - 10445 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:16410109..16412869 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 97066.10 Da | ||||||||||||||||||||||||
| IEP (calculated) | 6.33 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.85 | ||||||||||||||||||||||||
| Length | 837 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKKLFFFKSS SGNGTDHNKQ LHKQKDDHFQ RYLNSPKGLN KSQSEVSGAA LRRSRSLSSA AFVIDGTSSN QHRLRNHSSR CLTPERQFKE YGSMSTCSSN 101: VSSQVLDRYI DGEEHLERSK QKSGSLHSSS LSGSRRRLPP RAQSPSPLSE SGKDKRKSKG LRDASARSLA RSVIERLSHN TQGKSKALSY EPIRIQDVCG 201: KILDSNSDVL ANVVVPLTEE YEPVNEYYPD DQTELQYQQF FLHGKDMCKE DDVSSELEKR YKEAEKRVKL LSEEMEEKKF LSDCDFDISS LVGDIRQMEE 301: ERVGLAFEVL SLLRSQMDER ASTREDIRRV KNDWDLLLKR LEKEKTELQV QLETELDRRS SEWTSKVESF KVEEKRLRER VRELAEHNVS LQREISTFHE 401: KETERIDMIR HLDETVTELS ATAEEMREEN LFLMQNLSKL QESYTGSTDD LDYVRRNFEE KDMECKELHK SVTRLLRTCK EQEKTIQGLR DGFSEEIKKQ 501: PSEHVDKKLQ MEQLRLVGVE LSLRKEVESM KLEAESLRRE NNCLLNRVKG NGEEADIMTT FKLDNEMKMR VCHLQDQGIS MLNESTQLCY KFLKIIKEKS 601: VNSGWSEQFL IESEMRVHGI RRGTESLKRS LQTVTSLLLE KSNEMASNSE SSCSSAARPS SRSVEKSLRA ELRAETLVTS LLREKLYSKE QEIEQLHAEV 701: AAGVRGNEVL QCEIQNVLDN LSLNNHQLKD LKLQMVKKDE NINRMEINLQ EAAKELLTLP KVLEEREEMW KEVKECRKRN MDLESEKEML KKKVEKLEED 801: TLFKEGQITI LKDTLGSRHF DLLLSSPEFS YNDFLVQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)