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AT3G55060.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G39300.2); Has 61765 Blast hits to 33720 proteins in 2065 species: Archae - 846; Bacteria - 6964; Metazoa - 31967; Fungi - 5247; Plants - 3104; Viruses - 205; Other Eukaryotes - 13432 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJCCeggNOG:ENOG410ZATQEMBL:AL132970EMBL:CP002686
EnsemblPlants:AT3G55060EnsemblPlants:AT3G55060.1entrez:824672GeneID:824672
Gramene:AT3G55060.1hmmpanther:PTHR18937hmmpanther:PTHR18937:SF221HOGENOM:HOG000083563
KEGG:ath:AT3G55060ncoils:CoilOMA:FHENETEPhylomeDB:Q9M2W0
PIR:T47645Proteomes:UP000006548RefSeq:NP_191066.1TAIR:AT3G55060
UniGene:At.53934UniProt:Q9M2W0
Coordinates (TAIR10) chr3:-:20403189..20406222
Molecular Weight (calculated) 102880.00 Da
IEP (calculated) 6.85
GRAVY (calculated) -0.90
Length 896 amino acids
Sequence (TAIR10)
(BLAST)
001: MKKLFFFRSS GNGNDKQVNC EKEADSKMRT QASSQAEQEF DSPKSHGQVS GGLALRRSLS WSSAGFLFDK FGETSKNELT TSATKSKDRR RNHSSRCFTP
101: ERQVRERQCK ADKFQHDSSG SSSSCSSNVS SKVLDRYIDG EEHLEPCKQK SNSSHSGVSE SINRRRLPPR VQWTVPTSPS DTFDEKRKSQ SFREAKGTHL
201: RYSSADCVDN GLRHGSPRSV ARNVIERLSQ THGKSKGSNH EPITIQDVYG GSLNRTFDSS SDIAANVSLA EHYEPVNEYY TQDYGGHQQN CIRSRNVYKC
301: MEDDLDSELE MKIKEAEKRA KLFSAELEQQ RCLSDCDFDV SSLVGAIRKL EDERLHLAFE NVNLLRSQIV ERASAREEIR WLKSDWDLHI QRLEKEKSEL
401: QAGLEKELDR RSGEWTSKLE KFQLEEKKLR ERVRELAEHN VSLQRELSAF HENETENKDM ITHLERRVAE LTTTADKLHE ENNYVKQTLS KLQESYAGAT
501: EDLDFLRRNF EEKDQECREL HKSVTKFFRT CKEQGKTIEG LRDGVSEEVK KQPSEKLDQL VKKLQVEQVR LTGIELSLRR EVESMKLETD SLRHENICLL
601: NRLKGNGQEI DITTLKLENE LKMRVCYLQE QGLSMLNESS QLCYKLLKFI KGKLTQLPET YQDKNSVKDG LSEQFMIESE MKVHGIRRGT ENLKRSLQTV
701: TSVVASNSES SSSNTGRPRE QRNQSVEENL RAELSAETLI TSLVREKLYS KEKEIEQLQA ELAAAVRGNE ILRCEVQSSL DNLSVTTHEL KDLKHQMLKK
801: EESIRRLESN LQEAAKEMAR LNALLSKVSN ERGQIWSEYK QYGEKNMLLN SENETLKGMV EKLEEKVLEK EGEITILQDT IGSKHLNLLS SPDFLV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)