AT5G23770.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.998 What is SUBAcon? |
|||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : DOMAIN OF UNKNOWN FUNCTION 724 8 | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Member of the plant-specific DUF724 protein family. Arabidopsis has 10 DUF724 proteins. Loss of function mutant has a WT phenotype | ||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
DOMAIN OF UNKNOWN FUNCTION 724 8 (DUF8); FUNCTIONS IN: RNA binding; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Agenet (InterPro:IPR008395), Tudor-like, plant (InterPro:IPR014002), Protein of unknown function DUF724 (InterPro:IPR007930); BEST Arabidopsis thaliana protein match is: DOMAIN OF UNKNOWN FUNCTION 724 9 (TAIR:AT5G23780.1); Has 177 Blast hits to 150 proteins in 26 species: Archae - 2; Bacteria - 7; Metazoa - 1; Fungi - 4; Plants - 146; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:-:8014513..8016106 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 47890.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.57 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.70 | ||||||||||||||||||||||||||||
| Length | 421 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MFSPGTMVEV SSKINEGEVV WVPSMVIKEF KEDDEYKYIV KDKSFSCEGK KARPNKTVDL SSLRPIPVSV DEYQLEENVE VFLDGMGWRH GRVMGSQERA 101: IGTLSQKWYF VRLESTKKQL TFKQSDLRPL KVWEDGVWKV LQTRELSFTQ GSGDKTGDSV RNANESDPPL TPPPGIITPP LKQIEAGTQR KALSKKTLPR 201: NQNGSGNDST LENENSEDNN RKRKREENLG CVASVEQDKP KDTTMVLPFE KKLRIWETLE SMEVFKTVPQ SPHFSPLLVE SREDSREMSA VGMMLTFFGL 301: LDEVKALQHN DPISFFISLT NSFAELEKHG FNVKAPQSRI NKLLSLRDRQ SKKTEELKDA EKVTAEKESV KAENKRKILE LQRLNEEMDK EIAQSKSCAA 401: KIVQQLDDVK LEFLATASAP W |
||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)