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AT5G21280.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : hydroxyproline-rich glycoprotein family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
hydroxyproline-rich glycoprotein family protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J0K0eggNOG:ENOG410YGXXEMBL:AC140977EMBL:AL589883
EMBL:BT010724EMBL:BT010989EMBL:CP002688EnsemblPlants:AT5G21280
EnsemblPlants:AT5G21280.1entrez:832258GeneID:832258Gramene:AT5G21280.1
hmmpanther:PTHR37256hmmpanther:PTHR37256:SF1HOGENOM:HOG000240126KEGG:ath:AT5G21280
OMA:RASMSHAPhylomeDB:Q9C589Proteomes:UP000006548RefSeq:NP_680186.1
TAIR:AT5G21280UniGene:At.45837UniProt:Q9C589
Coordinates (TAIR10) chr5:-:7264094..7265514
Molecular Weight (calculated) 33631.00 Da
IEP (calculated) 5.14
GRAVY (calculated) -0.73
Length 302 amino acids
Sequence (TAIR10)
(BLAST)
001: MVRSNKQEPR VSSTYIRSLV KQQLAYSTTM TTTTTTTTND GSGGGKTQTQ THKKQVRRRL HTSRPYQERL LNMAEARREI VTALKQHRAS MRQATRIPPP
101: QPPPPPQPLN LFSPPPPPPP PDPFSWTNPS LNFLLPNQPL GLNLNFQDFN DFIQTSSTTS SSSSSSTSSS SSSIFPTNPH IYSSPSPPPT FTTATSDSAP
201: QLPSSSNGEN NVVTSAWWSE LMLKTVEPEI KPETEEVIVV EDDVFPKFSD VMEFPSWLNQ TEEELFHPYN LTDHYSSSPH NPPLSCMEIG EIEGMDGDDW
301: LA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)