suba logo
AT5G13360.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 0.545
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Auxin-responsive GH3 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Auxin-responsive GH3 family protein; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: Auxin-responsive GH3 family protein (TAIR:AT5G13370.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-285-MONOMERBioCyc:ARA:GQT-286-MONOMERBioCyc:ARA:GQT-287-MONOMEReggNOG:ENOG410IHE6
eggNOG:ENOG410XQH0EMBL:AK221567EMBL:AL163572EMBL:CP002688
EnsemblPlants:AT5G13360EnsemblPlants:AT5G13360.1EnsemblPlants:AT5G13360.2entrez:831177
ExpressionAtlas:Q9LYS0GeneID:831177Gramene:AT5G13360.1Gramene:AT5G13360.2
hmmpanther:PTHR31901hmmpanther:PTHR31901:SF5HOGENOM:HOG000238302InterPro:IPR004993
KEGG:00220+6.3.2.-KEGG:00261+6.3.2.-KEGG:00380+6.3.2.-KEGG:ath:AT5G13360
KO:K14487ncoils:CoilPANTHER:PTHR31901Pfam:PF03321
PhylomeDB:Q9LYS0PIR:T48583Proteomes:UP000006548RefSeq:NP_001031874.1
RefSeq:NP_196840.1SMR:Q9LYS0TAIR:AT5G13360UniGene:At.49013
UniProt:Q9LYS0
Coordinates (TAIR10) chr5:+:4283805..4286120
Molecular Weight (calculated) 66951.10 Da
IEP (calculated) 5.06
GRAVY (calculated) -0.16
Length 594 amino acids
Sequence (TAIR10)
(BLAST)
001: MLPKFDPTDQ KACLSLLEDV TTNVKQIQDS VLEAILSRNA HTEYLSGFLN GQADKKSFKK NVPVVTYEDI KPYIDRIANG EPSDLICDRP ISVLLTSSGT
101: SGGVPKLIPL TTEELEQRIS FASLYRPLLY KYIEGIRERK SFMLYFVTRE SETASGILVR TMITCVLKSV TPANSFIWDQ SQISPHAITT CSDTTQSMYC
201: QLLCGLLQRD NVGRLGAPFA SSFLKIIKFL EDHWPEFCSN IRTGCLSDWI TDPQCVSGIG KFLTAPNPEL ASLIEQECSQ TSWEAIVKRL WPKAKCIEAI
301: VTGTMAQYNP LLEFYSGGLP VISTFYGSSE CFFGLNLNPL SKPNEVSYTI IPCMAYFEFL EVEKDYESGH DPAENPVVVD LVDVKIGHDY EPVVTTFAGL
401: YRYRLGDVLR VTGFYNNAPQ FHFVGRQKVV LSIDMDKTYD EDLLKAVTNA SLLLEPHDLM LMDFTSRVDS SSYPGHYVLY WELGRKVKDA KLELDQNVLE
501: ECCFTIEESL DAVYRKGRKN DKNIGPLEIK VVKPGAFDKL MNFFLSRGSS VSQYKTPRSV TNEEALKILE ANVVSEFLSQ KTPSWELHEL HSSR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)