AT2G34080.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:extracellular 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Cysteine proteinases superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Cysteine proteinases superfamily protein; FUNCTIONS IN: cysteine-type peptidase activity, cysteine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT1G29090.1); Has 1344 Blast hits to 1324 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 1342; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr2:-:14393431..14394777 | ||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 38269.10 Da | ||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 7.31 | ||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.35 | ||||||||||||||||||||||||||||||||||||||||||||
Length | 345 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MASIMVLVTV LIILFTGFRI SQATSRTVIF REQSMVDKHE QWMARFSREY RDELEKNMRR DVFKKNLKFI ENFNKKGNKS YKLGVNEFAD WTNEEFLAIH 101: TGLKGLTEVS PSKVVAKTIS SQTWNVSDMV VESKDWRAEG AVTPVKYQGQ CGCCWAFSAV AAVEGVAKIA GGNLVSLSEQ QLLDCDREYD RGCDGGIMSD 201: AFNYVVQNRG IASENDYSYQ GSDGGCRSNA RPAARISGFQ TVPSNNERAL LEAVSRQPVS VSMDATGDGF MHYSGGVYDG PCGTSSNHAV TFVGYGTSQD 301: GTKYWLAKNS WGETWGEKGY IRIRRDVAWP QGMCGVAQYA FYPVA |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)