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AT2G46740.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:16356755 (2006): extracellular region
  • PMID:15593128 (2005): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : D-arabinono-1,4-lactone oxidase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
D-arabinono-1,4-lactone oxidase family protein; FUNCTIONS IN: oxidoreductase activity, D-arabinono-1,4-lactone oxidase activity, FAD binding, catalytic activity; INVOLVED IN: oxidation reduction; LOCATED IN: cell wall; EXPRESSED IN: leaf apex, root; CONTAINS InterPro DOMAIN/s: D-arabinono-1,4-lactone oxidase (InterPro:IPR007173), FAD-binding, type 2 (InterPro:IPR016166), Plant-specific FAD-dependent oxidoreductase (InterPro:IPR010030), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: D-arabinono-1,4-lactone oxidase family protein (TAIR:AT2G46750.1); Has 2786 Blast hits to 2671 proteins in 804 species: Archae - 14; Bacteria - 1897; Metazoa - 120; Fungi - 214; Plants - 254; Viruses - 0; Other Eukaryotes - 287 (source: NCBI BLink).
Protein Annotations
BRENDA:1.1.3.37BRENDA:1.1.3.8EC:1.1.3.8eggNOG:COG0277
eggNOG:KOG4730EMBL:AC005310EMBL:CP002685EnsemblPlants:AT2G46740
EnsemblPlants:AT2G46740.1entrez:819287Gene3D:3.30.43.10Gene3D:3.30.465.10
GeneID:819287Genevisible:O81030GO:GO:0003885GO:GO:0005618
GO:GO:0016020GO:GO:0019853GO:GO:0050105GO:GO:0050660
Gramene:AT2G46740.1hmmpanther:PTHR13878hmmpanther:PTHR13878:SF63HOGENOM:HOG000238179
InterPro:IPR006094InterPro:IPR007173InterPro:IPR010030InterPro:IPR016166
InterPro:IPR016167InterPro:IPR016169KEGG:00053+1.1.3.8KEGG:ath:AT2G46740
OMA:TNSLGAFPaxDb:O81030Pfam:O81030Pfam:PF01565
Pfam:PF04030Pfscan:PS51387PhylomeDB:O81030PIR:T02675
PRIDE:O81030PRO:PR:O81030PROSITE:PS51387ProteinModelPortal:O81030
Proteomes:UP000006548RefSeq:NP_182197.1SMR:O81030STRING:3702.AT2G46740.1
SUPFAM:SSF56176TAIR:AT2G46740TIGRfam:TIGR01677TIGRFAMs:TIGR01677
UniGene:At.28435UniGene:At.36465UniPathway:UPA00132UniProt:O81030
Coordinates (TAIR10) chr2:-:19205182..19207455
Molecular Weight (calculated) 64893.60 Da
IEP (calculated) 8.00
GRAVY (calculated) -0.09
Length 590 amino acids
Sequence (TAIR10)
(BLAST)
001: MAFGYSPSYC SFWRTLLGLY CLFTLVHTVI STPPEDPVKC VSGNTNCIVT NSLGAFPDRS TCRAANVAYP TTEAELVSIV AAATKAGRKM RVTTRYSHSI
101: PKLTCTDGND GLFISTKFLN HTVQADAKAM TLTVESGVTL RQLIAEAAKV GLALPYAPYW WGVTVGGMMG TGAHGSSLWG KGSAVHDYVT EIRMVSPGSV
201: NDGFAKIRVL SETTTPNEFN AAKVSLGVLG VISQVTFELQ PMFKRSLKYV MRNDLDFNDE ALTFGKKHEF ADFVWLPSQG KVVYRMDDRV AVNTLGNGLY
301: DFFPFRSQLS AVLATTRSSE ETQETLRDAH GKCVTATTIS STLFSTSYGL TNNGITFTGY PVIGSQNRMM SSGSCLDGLE DKLTSACAWD SRVKGVFYHQ
401: TTFSIPLTQV KSFINDIKSL LKIDSKSLCG LELYYGILMR YVTSSPAYLG KETEAIDFDI TYYRANDPLT PRLYEDFIEE IEQIALLKYN ALPHWGKNRN
501: LAFDGVIKKY KNAPAFLKVK ESYDPNGLFS SEWTDQILGI KGNPTIVKDG CALEGLCICS DDAHCAPSKG YLCRPGKVYK EARVCTHVPK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)