AT3G04420.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : NAC domain containing protein 48 | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
NAC domain containing protein 48 (NAC048); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 3 (TAIR:AT1G02220.1); Has 2729 Blast hits to 2712 proteins in 71 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2728; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:1172840..1174295 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 39039.80 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.09 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.77 | ||||||||||||||||||||||||||||||||
| Length | 342 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MENPVGLRFR PTDKEIVVDY LRPKNSDRDT SHVDRVISTV TIRSFDPWEL PCQSRIKLKD ESWCFFSPKE NKYGRGDQQI RKTKSGYWKI TGKPKPILRN 101: RQEIGEKKVL MFYMSKELGG SKSDWVMHEY HAFSPTQMMM TYTICKVMFK GDVREISSSS ASYGSEIEQS RDSLIPLLVN DSEEEAQIED AIPIEEWETW 201: LTDDGVDEQV NHIMNMKDDR NNHRPQKPLT GVLIDDSSDD DDDSDLLSPT TNSIENSSTC DSFGSSDQIN LVSLTQEVSQ ALITSIDTPE KIKSPYDDAQ 301: GTGAGGQKLG QETREKKRAG FFHRMIQIFV KKIHQCSSIS RT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)