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AT5G20160.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; FUNCTIONS IN: RNA binding; INVOLVED IN: ribosome biogenesis; LOCATED IN: nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: H/ACA ribonucleoprotein complex, subunit Nhp2, eukaryote (InterPro:IPR002415), Ribosomal protein L7Ae/L8/Nhp2 family (InterPro:IPR018492), Ribosomal protein L7Ae/L30e/S12e/Gadd45 (InterPro:IPR004038), Ribosomal protein L7Ae conserved site (InterPro:IPR004037); BEST Arabidopsis thaliana protein match is: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (TAIR:AT4G22380.1); Has 1810 Blast hits to 1810 proteins in 413 species: Archae - 342; Bacteria - 16; Metazoa - 565; Fungi - 259; Plants - 274; Viruses - 0; Other Eukaryotes - 354 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1358eggNOG:KOG3387EMBL:AY048213EMBL:AY086996
EMBL:AY094018EMBL:CP002688EnsemblPlants:AT5G20160EnsemblPlants:AT5G20160.1
entrez:832138ExpressionAtlas:Q94AF6Gene3D:3.30.1330.30GeneID:832138
GO:GO:0003723GO:GO:0005730GO:GO:0005840GO:GO:0042254
Gramene:AT5G20160.1hmmpanther:PTHR23105hmmpanther:PTHR23105:SF57HOGENOM:HOG000055226
InterPro:IPR002415InterPro:IPR004037InterPro:IPR004038InterPro:IPR018492
InterPro:IPR029064ncoils:CoilPfam:PF01248PhylomeDB:Q94AF6
PRINTS:PR00881PRINTS:PR00883PROSITE:PS01082Proteomes:UP000006548
Reactome:R-ATH-72163Reactome:R-ATH-72165RefSeq:NP_197516.1scanprosite:PS01082
SMR:Q94AF6STRING:3702.AT4G22380.1SUPFAM:SSF55315TAIR:AT5G20160
UniGene:At.23318UniProt:Q94AF6
Coordinates (TAIR10) chr5:-:6804075..6805102
Molecular Weight (calculated) 13898.00 Da
IEP (calculated) 7.41
GRAVY (calculated) 0.04
Length 128 amino acids
Sequence (TAIR10)
(BLAST)
001: MTGEVVNPKA YPLADSQLSI TILDLVQQAT NYKQLKKGAN EATKTLNRGI SEFVVMAADA EPLEILLHLP LLAEDKNVPY VFVPSKQALG RACGVTRPVI
101: ACSVTSNEAS QLKSQIQHLK DAIEKLLI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)