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AT4G22380.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27177187 (2016): nucleus
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:22550958 (2012): plastid
  • PMID:15496452 (2005): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; FUNCTIONS IN: RNA binding; INVOLVED IN: ribosome biogenesis; LOCATED IN: nucleolus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: H/ACA ribonucleoprotein complex, subunit Nhp2, eukaryote (InterPro:IPR002415), Ribosomal protein L7Ae/L8/Nhp2 family (InterPro:IPR018492), Ribosomal protein L7Ae/L30e/S12e/Gadd45 (InterPro:IPR004038), Ribosomal protein L7Ae conserved site (InterPro:IPR004037); BEST Arabidopsis thaliana protein match is: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (TAIR:AT5G20160.1); Has 1809 Blast hits to 1809 proteins in 413 species: Archae - 342; Bacteria - 16; Metazoa - 564; Fungi - 259; Plants - 274; Viruses - 0; Other Eukaryotes - 354 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1358eggNOG:KOG3387EMBL:AY086674EMBL:BT024580
EMBL:CP002687EnsemblPlants:AT4G22380EnsemblPlants:AT4G22380.1entrez:828333
Gene3D:3.30.1330.30GeneID:828333GO:GO:0003723GO:GO:0005730
GO:GO:0005840GO:GO:0042254Gramene:AT4G22380.1hmmpanther:PTHR23105
hmmpanther:PTHR23105:SF57HOGENOM:HOG000055226InterPro:IPR002415InterPro:IPR004037
InterPro:IPR004038InterPro:IPR018492InterPro:IPR029064KEGG:ath:AT4G22380
KO:K12845ncoils:CoilOMA:AIDKLMVPfam:PF01248
PhylomeDB:Q8LCC7PRINTS:PR00881PRINTS:PR00883ProMEX:Q8LCC7
PROSITE:PS01082Proteomes:UP000006548Reactome:R-ATH-72163Reactome:R-ATH-72165
RefSeq:NP_193969.1scanprosite:PS01082SMR:Q8LCC7STRING:3702.AT4G22380.1
SUPFAM:SSF55315TAIR:AT4G22380UniGene:At.70128UniProt:Q8LCC7
Coordinates (TAIR10) chr4:-:11812041..11812922
Molecular Weight (calculated) 13916.00 Da
IEP (calculated) 7.41
GRAVY (calculated) 0.02
Length 128 amino acids
Sequence (TAIR10)
(BLAST)
001: MTGEVVNPKA YPLADSQLSI TIMDLVQQAT NYKQLKKGAN EATKTLNRGI SEFVVMAADA EPLEILLHLP LLAEDKNVPY VFVPSKQALG RACGVTRPVI
101: ACSVTSNEAS QLKSQIQHLK DAIEKLLI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)