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AT5G20050.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.550
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21826108 (2012): Golgi trans-Golgi network multivesicular body
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Protein kinase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein kinase superfamily protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: S-domain-2 5 (TAIR:AT4G32300.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G20050-MONOMERBioGrid:17403EC:2.7.11.1eggNOG:COG0515
eggNOG:KOG1187EMBL:AF296836EMBL:AY037215EMBL:AY086017
EMBL:BT002682EMBL:CP002688EnsemblPlants:AT5G20050EnsemblPlants:AT5G20050.1
entrez:832127Gene3D:2.60.120.200GeneID:832127Genevisible:Q94C25
GO:GO:0004674GO:GO:0005524GO:GO:0016021Gramene:AT5G20050.1
hmmpanther:PTHR27002hmmpanther:PTHR27002:SF75HOGENOM:HOG000116550InParanoid:Q94C25
IntAct:Q94C25InterPro:IPR000719InterPro:IPR008271InterPro:IPR011009
InterPro:IPR013320InterPro:IPR017441iPTMnet:Q94C25KEGG:ath:AT5G20050
OMA:LRVEYSYPaxDb:Q94C25Pfam:PF00069Pfam:Q94C25
Pfscan:PS50011PhylomeDB:Q94C25PRIDE:Q94C25PRO:PR:Q94C25
PROSITE:PS00107PROSITE:PS00108PROSITE:PS50011ProteinModelPortal:Q94C25
Proteomes:UP000006548RefSeq:NP_197505.1scanprosite:PS00107scanprosite:PS00108
SMART:SM00220SMR:Q94C25STRING:3702.AT5G20050.1SUPFAM:SSF56112
TAIR:AT5G20050TMHMM:TMhelixUniGene:At.21169UniProt:Q94C25
Coordinates (TAIR10) chr5:+:6774381..6775739
Molecular Weight (calculated) 51217.50 Da
IEP (calculated) 9.33
GRAVY (calculated) -0.12
Length 452 amino acids
Sequence (TAIR10)
(BLAST)
001: MEDKKANIIA TILILALVVV IIAARVSLKL SKTFYLIAGV DISLILAVIC FLIIRSRYNK ERKLLVSRFA SEGRELRIEY SFLRKVAGVP TKFKLEDLEE
101: ATDGFRSLIG KGGSGSVFKG VLKDGSQVAV KRIEGEEKGE REFRSEVAAI ASVQHKNLVR LYGYSSSTSA NRPRFLVYDY IVNSSLDIWI FPDRGNRGRS
201: GGGCLSWEQR YQVAIDVAKA LAYLHHDCRS KILHLDVKPE NILLDENFRA VVTDFGLSKL IARDESRVLT DIRGTRGYLA PEWLLEHGIS EKSDVYSYGI
301: VLLEMIGGRR SISRVEVKET KKKKLEYFPR IVNQKMRERK IMEIVDQRLI EVNEVDEEEV MKLVCVALWC IQEKSKKRPD MTMVIEMLEG RVPVNEPPDS
401: DVVVVDLLAA DDDDASTGVR RVVNIPKLQI HRERNFRLSS ICSSIISPIS PR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)