AT5G13290.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein kinase superfamily protein | ||||||||||||
| Curator Summary (TAIR10) |
Encodes a protein with predicted Ser/Thr kinase activity and membrane localization that is involved in the CLV3 signaling pathway that represses WUS expression in the meristem. Loss of function of CRN can suppress the phenotype caused by overexpression of CLV3. SOL2 isolated as a suppressor of root- specific overexpression of CLE19, a clavata3 like gene. sol2 partially suppresses the short root phenotype caused by CLE19 overexpression. Mutant flowers have extra carpels. | ||||||||||||
| Computational Description (TAIR10) |
CORYNE (CRN); FUNCTIONS IN: protein kinase activity, kinase activity, ATP binding; INVOLVED IN: regulation of meristem growth, regulation of root meristem growth, meristem maintenance, regulation of flower development; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT2G31880.1); Has 90342 Blast hits to 89573 proteins in 2628 species: Archae - 105; Bacteria - 9194; Metazoa - 31524; Fungi - 7067; Plants - 29119; Viruses - 228; Other Eukaryotes - 13105 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:4252924..4254215 | ||||||||||||
| Molecular Weight (calculated) | 41865.80 Da | ||||||||||||
| IEP (calculated) | 9.22 | ||||||||||||
| GRAVY (calculated) | -0.09 | ||||||||||||
| Length | 376 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKQRRRRNGC SSSNTISLLL LFFLVFFSRT STSTSCRRRT VKHLSTTSTS STPLESRITS KVIVISIVSG ILTGLVSALV LAFLVRSIVK FMKQTPILKG 101: PVVFSPKITP KSLHAALSNV KRLGSLEGVG SPESSSSKSV KRRLQKELEL LAGLRHRNLM SLRAYVRESD EFSLVYDYMP NGSLEDVMNK VRTKEVELGW 201: EIRLRVAVGI VKGLQYLHFS CETQILHYNL KPTNVMLDSE FEPRLADCGL AKIMPSSHTA VSCYSAPESS QSNRYTDKSD IFSFGMILGV LLTGRDPTHP 301: FCEESASGGS LGQWLKHLQQ SGEAREALDK TILGEEVEED EMLMALRITI ICLSDFPADR PSSDELVHML TQLHSF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)