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AT5G11860.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SCP1-like small phosphatase 5
Curator
Summary (TAIR10)
Encodes a SCP1-like small phosphatase (SSP). Three SSPs form a unique group with long N-terminal extensions: AT5G46410 (SSP4), AT5G11860 (SSP5), AT4G18140 (SSP4b). SSP4 and SSP4b were localized exclusively in the nuclei, whereas SSP5 accumulated in both nuclei and cytoplasm. All three SSPs encodes active CTD phosphatases like animal SCP1 family proteins, with distinct substrate specificities: SSP4 and SSP4b could dephosphorylate both Ser2-PO(4) and Ser5-PO(4) of CTD, whereas SSP5 dephosphorylated only Ser5-PO(4).
Computational
Description (TAIR10)
SCP1-like small phosphatase 5 (SSP5); CONTAINS InterPro DOMAIN/s: Dullard-like phosphatase domain (InterPro:IPR011948), NLI interacting factor (InterPro:IPR004274); BEST Arabidopsis thaliana protein match is: SCP1-like small phosphatase 4 (TAIR:AT5G46410.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G11860-MONOMERBioCyc:ARA:GQT-2421-MONOMERBioCyc:ARA:GQT-2422-MONOMERBioCyc:ARA:GQT-2423-MONOMER
DNASU:831059eggNOG:COG5190eggNOG:KOG1605EMBL:AL163812
EMBL:AY085441EMBL:BT020406EMBL:CP002688EnsemblPlants:AT5G11860
EnsemblPlants:AT5G11860.1EnsemblPlants:AT5G11860.2EnsemblPlants:AT5G11860.3EnsemblPlants:AT5G11860.4
entrez:831059Gene3D:3.40.50.1000GeneID:831059GO:GO:0000775
GO:GO:0005634GO:GO:0005694GO:GO:0005737GO:GO:0006470
GO:GO:0008420Gramene:AT5G11860.1Gramene:AT5G11860.2Gramene:AT5G11860.3
Gramene:AT5G11860.4hmmpanther:PTHR12210hmmpanther:PTHR12210:SF13HOGENOM:HOG000236379
InterPro:IPR004274InterPro:IPR011948InterPro:IPR023214KEGG:ath:AT5G11860
KO:K17616OMA:FNEEEHMPfam:PF03031Pfscan:PS50969
PhylomeDB:Q9LYI7PIR:T48545PROSITE:PS50969Proteomes:UP000006548
RefSeq:NP_001078572.1RefSeq:NP_196747.1RefSeq:NP_850809.1RefSeq:NP_974767.1
SMART:SM00577SMR:Q9LYI7STRING:3702.AT5G11860.1SUPFAM:SSF56784
TAIR:AT5G11860tair10-symbols:SSP5TIGRfam:TIGR02251TIGRFAMs:TIGR02251
UniGene:At.49009UniProt:Q9LYI7
Coordinates (TAIR10) chr5:-:3822024..3823395
Molecular Weight (calculated) 34849.30 Da
IEP (calculated) 4.21
GRAVY (calculated) -0.26
Length 305 amino acids
Sequence (TAIR10)
(BLAST)
001: MEDDDSPSSR DLDAQNPYDR LLALDTSTVD PNCNLDSVSA IYLAMKSSKL ECVDERGQDS LITSVCMEDE EDEELDEFDP YLFIKNLPNL SSVVPTFRPV
101: LLPKQTRSCP PISLVLDLDE TLVHSTLEPC GEVDFTFPVN FNEEEHMVYV RCRPHLKEFM ERVSRLFEII IFTASQSIYA EQLLNVLDPK RKLFRHRVYR
201: DSCVFFDGNY LKDLSVLGRD LSRVIIVDNS PQAFGFQVEN GVPIESWFND PSDKELLHLL PFLESLIGVE DVRPMIAKKF NLREKIDAAV AAPEYPAEAG
301: DPFER
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)