AT5G05890.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.983 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : UDP-Glycosyltransferase superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
UDP-Glycosyltransferase superfamily protein; FUNCTIONS IN: UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 leaf senescence stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-Glycosyltransferase superfamily protein (TAIR:AT5G05880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:+:1772567..1774012 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 51740.40 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.16 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.14 | ||||||||||||||||||||||||||||||||
| Length | 455 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEKSNGLRVI LFPLPLQGCI NPMIQLAKIL HSRGFSITVI HTCFNAPKAS SHPLFTFLEI PDGLSETEKR TNNTKLLLTL LNRNCESPFR ECLSKLLQSA 101: DSETGEEKQR ISCLIADSGW MFTQPIAQSL KLPILVLSVF TVSFFRCQFV LPKLRREVYL PLQDSEQEDL VQEFPPLRKK DIVRILDVET DILDPFLDKV 201: LQMTKASSGL IFMSCEELDH DSVSQAREDF KIPIFGIGPS HSHFPATSSS LSTPDETCIP WLDKQEDKSV IYVSYGSIVT ISESDLIEIA WGLRNSDQPF 301: LLVVRVGSVR GREWIETIPE EIMEKLNEKG KIVKWAPQQD VLKHRAIGGF LTHNGWSSTV ESVCEAVPMI CLPFRWDQML NARFVSDVWM VGINLEDRVE 401: RNEIEGAIRR LLVEPEGEAI RERIEHLKEK VGRSFQQNGS AYQSLQNLID YISSF |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)